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MF063068.1__ARV77481.1__NOXIFER_316__00312

Bact-Vir

MF063068.1__ARV77481.1__NOXIFER_316__00312

Identity

Accession:
MF063068 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Noxifervirus› Pseudomonas_phage_Noxifer

TaxID: 2006684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-100
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.61 31.0 3.96e-01 85.9% 87.0%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 44.0 4.01e-01 76.8% 98.5%
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.60 46.0 3.86e-01 82.8% 52.9%
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 45.0 4.19e-01 82.8% 97.7%
2yyoA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.59 52.0 4.48e-01 100.0% 84.4%
4rmmA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 46.0 4.18e-01 86.9% 80.7%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 4.57e-01 100.0% 89.4%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 4.55e-01 100.0% 91.3%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 36.0 4.09e-01 86.9% 84.0%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 52.0 4.74e-01 100.0% 81.8%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 45.0 3.99e-01 86.9% 87.4%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 41.0 4.13e-01 76.8% 91.9%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.56 40.0 3.37e-01 75.8% 99.5%
3bpsA02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.56 39.0 3.44e-01 100.0% 47.3%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 39.0 3.50e-01 71.7% 84.7%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 4.31e-01 100.0% 81.4%
1nijA02 3.30.1220.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Yjia; Chain: A;domain 2 › CobW-like, C-terminal domain 0.55 41.0 3.92e-01 100.0% 67.2%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.91e-01 100.0% 68.2%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.55 47.0 3.54e-01 97.0% 66.5%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.55 47.0 3.50e-01 98.0% 70.8%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.54 37.0 3.14e-01 70.7% 82.5%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.86e-01 100.0% 84.9%
3cjxA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.41e-01 100.0% 50.0%
6frlA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 48.0 3.07e-01 99.0% 91.0%
3h7jA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.74e-01 100.0% 65.8%
3juuA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.49e-01 100.0% 63.1%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.90e-01 100.0% 89.4%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 38.0 4.00e-01 97.0% 83.1%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 47.0 4.72e-01 100.0% 98.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.52 37.0 3.94e-01 83.8% 82.2%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 4.05e-01 100.0% 69.5%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.68e-01 100.0% 61.5%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.82e-01 100.0% 89.3%
1rhfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.85e-01 94.9% 84.6%
2ej8B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.78e-01 88.9% 87.8%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.50 45.0 3.65e-01 100.0% 72.1%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 4.45e-01 100.0% 95.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3808166 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 50.0 5.25e-01 72.7% 91.1%
5073452 7072.1.1.0 ↗ beta sandwiches › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain 0.64 46.0 3.93e-01 100.0% 47.7%
3278010 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.61 47.0 4.10e-01 84.8% 73.1%
3564951 10.1.1.23 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized 0.61 53.0 4.32e-01 100.0% 83.5%
5079972 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 44.0 3.94e-01 75.8% 88.4%
3289567 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.60 42.0 3.86e-01 73.7% 96.3%
5014272 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 37.0 4.29e-01 84.8% 88.6%
184925 11.21.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C 0.59 40.0 4.51e-01 100.0% 97.3%
3718765 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 51.0 4.47e-01 100.0% 82.6%
4004318 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.56 40.0 3.80e-01 99.0% 60.8%
5060937 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 36.0 4.08e-01 75.8% 86.7%
3956013 881.1.1.14 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3515 0.56 40.0 3.75e-01 76.8% 89.1%
3191595 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.55 47.0 3.70e-01 100.0% 60.5%
5030436 4111.1.1.0 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like 0.54 49.0 4.65e-01 100.0% 94.0%
3636503 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.53 34.0 3.92e-01 88.9% 92.9%
3915206 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 48.0 3.96e-01 100.0% 92.0%
3936599 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 48.0 4.19e-01 99.0% 96.6%
1487334 5092.1.1.7 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Fibre_HD 0.53 37.0 3.57e-01 99.0% 62.9%
3258412 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 47.0 4.23e-01 99.0% 92.6%
3244440 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 47.0 4.54e-01 99.0% 90.0%
3708445 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 47.0 4.28e-01 100.0% 96.2%
5044223 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 43.0 4.31e-01 100.0% 90.0%
5009577 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 42.0 3.94e-01 91.9% 100.0%
5050764 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 42.0 4.01e-01 100.0% 76.5%
3903928 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 44.0 3.64e-01 100.0% 66.2%
3239669 10.4.1.19 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein 0.51 44.0 4.36e-01 100.0% 90.5%
3219057 10.32.1.308 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CUB_M02D8_5_7th 0.51 46.0 4.37e-01 100.0% 90.4%
3227595 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 45.0 4.28e-01 99.0% 91.3%
4948100 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 38.0 2.78e-01 80.8% 73.2%