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MF074189.1__ARV77562.1__X__00057

Bact-Vir

MF074189.1__ARV77562.1__X__00057

Identity

Accession:
MF074189 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-61
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yy5A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.71 55.0 4.30e-01 85.2% 43.7%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 45.0 4.18e-01 83.3% 83.8%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.09e-01 100.0% 66.7%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 3.64e-01 100.0% 68.1%
3kzqA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 47.0 3.22e-01 94.4% 29.6%
2lklA01 1.10.1900.40 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 0.57 46.0 4.29e-01 94.4% 75.0%
2o71A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 48.0 4.11e-01 98.1% 91.2%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.56 41.0 3.89e-01 100.0% 66.7%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.56 36.0 3.56e-01 72.2% 60.0%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 41.0 4.12e-01 83.3% 92.5%
1x9fD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 42.0 3.26e-01 96.3% 92.9%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.52 41.0 3.38e-01 100.0% 56.5%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.51 35.0 3.25e-01 74.1% 60.5%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.51 37.0 3.06e-01 79.6% 66.7%
5ojcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 39.0 3.06e-01 100.0% 59.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4441096 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 32.0 3.14e-01 98.1% 41.7%
3390239 3525.1.1.0 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.60 45.0 4.34e-01 87.0% 93.8%
184784 185.2.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › PfEMP1 core intracellular domain › PfEMP1 core intracellular domain › ATS 0.57 46.0 4.13e-01 94.4% 66.7%
3632015 103.1.1.112 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF7071 0.55 38.0 3.65e-01 75.9% 63.2%
3979083 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.55 36.0 3.58e-01 100.0% 62.7%
4516913 2485.1.1.10 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DSBA 0.54 44.0 3.17e-01 100.0% 32.6%
3222248 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.50 39.0 2.71e-01 85.2% 30.0%
5038830 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.50 35.0 2.85e-01 74.1% 51.0%
D2 high residues 147-323
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00004.36 best AAA 27.5 5.20e-06 78.0% 85.5%
PF07728.21 AAA_5 42.0 1.30e-10 76.3% 100.0%
D3 high residues 328-399
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 45.0 4.58e-01 77.8% 66.7%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.69 54.0 5.18e-01 87.5% 91.8%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 53.0 4.68e-01 84.7% 65.1%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.66 49.0 5.04e-01 79.2% 98.5%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 53.0 4.88e-01 90.3% 80.2%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.66 51.0 4.37e-01 84.7% 87.9%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 51.0 4.85e-01 88.9% 88.6%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.63 45.0 4.62e-01 75.0% 86.6%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 49.0 4.32e-01 86.1% 73.6%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 49.0 4.69e-01 88.9% 94.3%
2d6fC03 1.10.150.380 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain 0.61 35.0 3.98e-01 75.0% 76.9%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.61 52.0 4.13e-01 100.0% 83.7%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.61 51.0 3.74e-01 93.1% 77.4%
2i53A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 47.0 4.15e-01 86.1% 73.0%
1jswA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.60 47.0 3.99e-01 91.7% 73.7%
1eq1A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.59 47.0 3.68e-01 88.9% 55.4%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 44.0 4.33e-01 86.1% 75.9%
1tuaA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 45.0 4.27e-01 81.9% 97.6%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.58 45.0 3.68e-01 87.5% 86.9%
1un8A02 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.58 45.0 3.46e-01 90.3% 93.2%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 43.0 3.95e-01 83.3% 72.3%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 48.0 3.31e-01 97.2% 71.4%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 43.0 4.09e-01 84.7% 87.4%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 42.0 3.55e-01 84.7% 63.3%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.53 34.0 3.80e-01 76.4% 100.0%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 40.0 4.02e-01 88.9% 80.0%
2vmaA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.52 41.0 3.47e-01 86.1% 59.8%
5k3hA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 42.0 3.50e-01 87.5% 66.9%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.51 36.0 3.26e-01 77.8% 58.0%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 42.0 3.87e-01 95.8% 97.0%
2hwjA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 36.0 3.84e-01 75.0% 91.8%
2cu2A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 44.0 2.87e-01 100.0% 43.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586873 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.86 79.0 7.01e-01 100.0% 85.0%
4147448 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.86 78.0 7.25e-01 100.0% 93.3%
5002943 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.84 76.0 7.04e-01 100.0% 93.3%
4425454 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.83 75.0 6.60e-01 100.0% 80.0%
3944791 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.82 74.0 6.88e-01 100.0% 91.1%
4033548 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.82 74.0 6.75e-01 100.0% 92.5%
4565984 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.80 71.0 6.39e-01 100.0% 86.0%
4928225 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 70.0 6.32e-01 100.0% 90.0%
4042777 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.78 72.0 6.62e-01 100.0% 86.7%
4156739 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.71 51.0 3.56e-01 75.0% 40.9%
3980766 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 52.0 4.54e-01 87.5% 64.5%
3383044 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.62 48.0 4.23e-01 84.7% 64.8%
3409013 148.1.3.40 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid 0.61 47.0 3.94e-01 87.5% 68.9%
221869 235.1.1.16 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Peptidase_U40 0.61 51.0 4.05e-01 100.0% 79.8%
4091000 632.2.1.16 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › PLDc_N 0.58 40.0 4.07e-01 80.6% 74.3%
3781919 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 51.0 4.33e-01 100.0% 73.9%
3428082 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.57 41.0 4.14e-01 80.6% 80.0%
4964415 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.56 46.0 3.73e-01 100.0% 47.4%
3939248 148.1.3.6 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Vps4_C,AAA_lid_3 0.55 43.0 3.70e-01 84.7% 73.9%
5029259 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.55 45.0 3.67e-01 100.0% 47.4%
3639119 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.55 43.0 3.53e-01 88.9% 73.8%
5012961 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.55 45.0 3.70e-01 100.0% 49.2%
4607154 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 38.0 3.21e-01 75.0% 71.9%
4321362 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.54 38.0 2.84e-01 75.0% 30.0%
4994573 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.53 39.0 3.81e-01 81.9% 85.0%
2947 5102.1.1.1 alpha arrays › C-terminal helical domain in Atu1540-like proteins › C-terminal helical domain in Atu1540-like proteins › C-terminal helical domain in Atu1540-like proteins › ParBc_2 0.52 40.0 3.61e-01 87.5% 73.6%
5068927 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.52 44.0 3.76e-01 100.0% 57.4%
5082038 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.52 46.0 3.81e-01 100.0% 56.7%
5023505 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.52 44.0 3.59e-01 100.0% 49.6%
5066095 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.52 45.0 3.59e-01 100.0% 48.6%
5070938 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.51 44.0 3.57e-01 100.0% 50.8%
4952825 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.51 44.0 3.68e-01 100.0% 55.8%
5028871 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.51 44.0 3.54e-01 100.0% 49.6%
4964085 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.51 44.0 3.61e-01 100.0% 52.3%
3877844 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.50 41.0 3.88e-01 95.8% 80.0%