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MF133445.1__ASD53537.1__PBI_LUCKY2013_144__00144
Bact-VirMF133445.1__ASD53537.1__PBI_LUCKY2013_144__00144
Identity
- Accession:
- MF133445 ↗
- Kingdom:
- phage
Quality
64.0
mean pLDDT
Taxonomy
TaxID: 2014349
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 16-86
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 21.8 | 2.30e-04 | 66.2% | 97.9% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.75 | 66.0 | 6.25e-01 | 100.0% | 81.9% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.75 | 47.0 | 3.83e-01 | 77.5% | 36.6% |
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.74 | 45.0 | 3.57e-01 | 77.5% | 31.2% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.72 | 64.0 | 4.97e-01 | 94.4% | 64.8% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.71 | 43.0 | 4.58e-01 | 74.6% | 69.4% |
| 5eyaF00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 42.0 | 4.11e-01 | 81.7% | 55.3% |
| 2dsmA00 | 3.30.40.30 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › YqaI domain | 0.70 | 40.0 | 4.07e-01 | 77.5% | 55.6% |
| 2dloA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.70 | 46.0 | 4.49e-01 | 95.8% | 60.5% |
| 1wfkA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 43.0 | 4.22e-01 | 73.2% | 58.4% |
| 1w4rA02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.69 | 40.0 | 4.97e-01 | 76.1% | 100.0% |
| 4uf0A03 | 2.10.110.20 | Mainly Beta › Ribbon › Cysteine Rich Protein › | 0.67 | 48.0 | 4.98e-01 | 95.8% | 81.5% |
| 3o58V00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.66 | 41.0 | 4.41e-01 | 74.6% | 74.6% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.58 | 51.0 | 3.95e-01 | 100.0% | 57.4% |
| 2xzm500 | 3.30.1740.20 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 | 0.56 | 39.0 | 3.47e-01 | 70.4% | 68.4% |
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.56 | 40.0 | 4.48e-01 | 77.5% | 98.1% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.54 | 39.0 | 3.58e-01 | 77.5% | 74.2% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.53 | 41.0 | 3.80e-01 | 84.5% | 77.7% |
| 1h59B00 | 4.10.40.20 | Few Secondary Structures › Irregular › Omega-AgatoxinV › | 0.53 | 32.0 | 3.86e-01 | 73.2% | 97.8% |
| 3j7aZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.52 | 39.0 | 3.90e-01 | 80.3% | 97.2% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 44.0 | 3.24e-01 | 98.6% | 88.8% |
| 1dqnA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 36.0 | 2.54e-01 | 73.2% | 94.3% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3468455 | 376.1.3.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX | 0.88 | 48.0 | 6.34e-01 | 74.6% | 97.5% |
| 3963404 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.86 | 78.0 | 6.99e-01 | 97.2% | 84.2% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.84 | 73.0 | 6.20e-01 | 97.2% | 60.0% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.84 | 72.0 | 7.10e-01 | 91.5% | 86.7% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.83 | 66.0 | 6.65e-01 | 95.8% | 84.3% |
| 3950953 | 377.1.1.78 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 | 0.83 | 65.0 | 6.62e-01 | 95.8% | 84.3% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 74.0 | 7.15e-01 | 97.2% | 86.3% |
| 1144783 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 69.0 | 5.23e-01 | 97.2% | 40.0% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.82 | 66.0 | 6.52e-01 | 100.0% | 81.3% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.82 | 64.0 | 5.82e-01 | 95.8% | 63.8% |
| 3938379 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.81 | 50.0 | 5.22e-01 | 77.5% | 67.7% |
| 3278018 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.80 | 59.0 | 6.46e-01 | 87.3% | 100.0% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.79 | 62.0 | 6.49e-01 | 94.4% | 93.8% |
| 3953524 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.78 | 63.0 | 4.85e-01 | 95.8% | 40.0% |
| 5042937 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.78 | 45.0 | 5.06e-01 | 78.9% | 74.5% |
| 3876888 | 376.1.1.102 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 | 0.77 | 46.0 | 3.91e-01 | 78.9% | 37.4% |
| 3183646 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.77 | 43.0 | 4.13e-01 | 74.6% | 48.2% |
| 3952892 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 63.0 | 5.21e-01 | 95.8% | 51.2% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.75 | 68.0 | 5.76e-01 | 100.0% | 83.5% |
| 5034882 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.75 | 47.0 | 5.68e-01 | 74.6% | 100.0% |
| 4965229 | 377.1.1.133 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 | 0.75 | 50.0 | 5.85e-01 | 77.5% | 98.0% |
| 3745376 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.74 | 46.0 | 4.51e-01 | 76.1% | 58.7% |
| 3252718 | 377.1.1.96 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF25999 | 0.74 | 42.0 | 5.34e-01 | 73.2% | 100.0% |
| 3286658 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 68.0 | 5.46e-01 | 100.0% | 92.3% |
| 3720327 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.74 | 44.0 | 3.93e-01 | 77.5% | 43.0% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 64.0 | 5.17e-01 | 95.8% | 53.0% |
| 3957069 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.72 | 64.0 | 4.93e-01 | 100.0% | 71.9% |
| 3356935 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.71 | 55.0 | 5.42e-01 | 83.1% | 77.3% |
| 3209528 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 63.0 | 5.11e-01 | 100.0% | 99.3% |
| 3739776 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.68 | 39.0 | 3.84e-01 | 78.9% | 52.0% |
| 3269939 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 42.0 | 3.98e-01 | 77.5% | 51.8% |
| 3402911 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 49.0 | 4.94e-01 | 74.6% | 75.7% |
| 3520111 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 41.0 | 4.32e-01 | 78.9% | 67.2% |
| 3849360 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.67 | 46.0 | 4.52e-01 | 78.9% | 66.7% |
| 3199415 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.67 | 60.0 | 4.12e-01 | 100.0% | 73.1% |
| 4997007 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.66 | 44.0 | 4.50e-01 | 74.6% | 70.0% |
| 3722098 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.66 | 43.0 | 4.54e-01 | 78.9% | 73.8% |
| 3466575 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.66 | 44.0 | 4.63e-01 | 77.5% | 76.9% |
| 4966035 | 376.1.3.98 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 | 0.65 | 46.0 | 4.99e-01 | 77.5% | 88.3% |
| 4940846 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 39.0 | 4.26e-01 | 73.2% | 72.9% |
| 3714738 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.64 | 41.0 | 3.51e-01 | 74.6% | 39.2% |
| 3611182 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.64 | 41.0 | 4.00e-01 | 74.6% | 58.7% |
| 3998594 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 43.0 | 4.28e-01 | 78.9% | 66.7% |
| 5061253 | 376.1.3.97 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 | 0.63 | 52.0 | 5.03e-01 | 95.8% | 80.0% |
| 3805637 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.61 | 46.0 | 4.45e-01 | 80.3% | 77.5% |
| 5024194 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.61 | 42.0 | 4.12e-01 | 70.4% | 78.7% |
| 3700576 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.60 | 43.0 | 4.12e-01 | 77.5% | 63.5% |
| 4941505 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 43.0 | 4.48e-01 | 74.6% | 90.8% |
| 3804047 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.59 | 45.0 | 3.97e-01 | 81.7% | 88.3% |
| 3253507 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.59 | 43.0 | 4.40e-01 | 78.9% | 78.6% |
| 3786592 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 45.0 | 3.77e-01 | 81.7% | 49.2% |
| 5066402 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.58 | 40.0 | 4.11e-01 | 70.4% | 85.3% |
| None | — | 0.57 | 51.0 | 3.77e-01 | 100.0% | 79.5% | |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.57 | 41.0 | 4.27e-01 | 76.1% | 98.5% |
| 4030676 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 38.0 | 3.92e-01 | 76.1% | 78.5% |
| 4946781 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 32.0 | 3.66e-01 | 76.1% | 88.9% |
| 4102237 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 47.0 | 4.17e-01 | 97.2% | 71.4% |
| 4581802 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.54 | 38.0 | 2.98e-01 | 76.1% | 86.1% |
| 3783047 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.53 | 45.0 | 3.68e-01 | 97.2% | 56.4% |
| 5076094 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.50 | 36.0 | 3.90e-01 | 76.1% | 100.0% |
D2
medium
residues 87-152