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MF140427.1__ASR83930.1__SEA_SHROOMS_50__00050
Bact-VirMF140427.1__ASR83930.1__SEA_SHROOMS_50__00050
Identity
- Accession:
- MF140427 ↗
- Kingdom:
- phage
Quality
73.2
mean pLDDT
Taxonomy
TaxID: 2015868
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wzpR02 | 3.55.50.50 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 | 0.60 | 47.0 | 3.92e-01 | 90.4% | 100.0% |
| 2p5zX02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.58 | 48.0 | 4.06e-01 | 100.0% | 78.4% |
| 7uzqK01 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.58 | 44.0 | 2.76e-01 | 90.4% | 86.9% |
| 3c18A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 41.0 | 3.31e-01 | 92.3% | 78.3% |
| 2lfpA01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.51 | 40.0 | 3.19e-01 | 100.0% | 92.6% |
| 4h3sA03 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.50 | 36.0 | 2.90e-01 | 78.8% | 93.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974972 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.64 | 43.0 | 3.16e-01 | 71.2% | 59.1% |
| 3507568 | 207.1.1.218 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27086 | 0.61 | 43.0 | 3.08e-01 | 76.9% | 26.1% |
| 4027011 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 49.0 | 3.06e-01 | 94.2% | 27.2% |
| 3338989 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 42.0 | 3.75e-01 | 82.7% | 73.8% |
| 3703913 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.55 | 38.0 | 2.80e-01 | 71.2% | 28.7% |
| 3586574 | 207.1.1.218 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27086 | 0.54 | 38.0 | 2.78e-01 | 75.0% | 26.2% |
| 3613411 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.53 | 41.0 | 3.21e-01 | 100.0% | 76.7% |
| 4971206 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.51 | 36.0 | 2.30e-01 | 84.6% | 82.6% |
| 1159556 | 2498.1.1.28 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF885 | 0.50 | 42.0 | 2.41e-01 | 100.0% | 73.5% |
| 3470535 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.50 | 40.0 | 2.52e-01 | 96.2% | 60.6% |
| 3839968 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.50 | 41.0 | 2.86e-01 | 100.0% | 34.0% |
| 4521047 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.50 | 35.0 | 2.38e-01 | 75.0% | 34.4% |