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MF150911.1__ASN73059.1__R2B_p022__00022

Bact-Vir

MF150911.1__ASN73059.1__R2B_p022__00022

Identity

Accession:
MF150911 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-100
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13356.13 best Arm-DNA-bind_3 58.7 6.90e-16 100.0% 90.4%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.88 75.0 7.74e-01 89.0% 96.1%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.72 51.0 4.01e-01 74.4% 80.6%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.71 58.0 5.17e-01 90.2% 95.0%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.70 52.0 4.65e-01 78.0% 93.0%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 50.0 4.68e-01 78.0% 90.3%
1j1tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 56.0 4.06e-01 89.0% 61.4%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.68 52.0 5.31e-01 82.9% 92.5%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 48.0 4.35e-01 78.0% 92.1%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 46.0 3.95e-01 78.0% 80.3%
3v39A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 48.0 3.46e-01 80.5% 82.0%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 46.0 3.33e-01 78.0% 29.0%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 45.0 3.85e-01 78.0% 80.9%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 44.0 4.08e-01 76.8% 83.0%
2ex2A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 45.0 3.30e-01 82.9% 70.2%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 43.0 4.11e-01 78.0% 66.3%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.74e-01 95.1% 43.3%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 42.0 2.77e-01 75.6% 92.4%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 39.0 3.36e-01 70.7% 77.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.00e-01 73.2% 77.9%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 46.0 3.67e-01 87.8% 54.1%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 39.0 3.51e-01 72.0% 59.5%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.54e-01 96.3% 41.8%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.57 41.0 3.95e-01 78.0% 84.4%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 39.0 3.15e-01 73.2% 89.0%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.32e-01 70.7% 80.6%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.56 43.0 3.43e-01 86.6% 82.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.55 46.0 3.87e-01 90.2% 82.9%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 39.0 3.50e-01 74.4% 56.7%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 39.0 3.80e-01 74.4% 74.7%
3e35A01 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.55 39.0 2.94e-01 76.8% 83.6%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 27.0 3.52e-01 74.4% 90.5%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.54 42.0 3.30e-01 84.1% 54.8%
3azwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.40e-01 96.3% 38.7%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 36.0 3.38e-01 70.7% 96.3%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 38.0 3.46e-01 75.6% 92.8%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 40.0 3.59e-01 81.7% 70.3%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.15e-01 86.6% 81.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4007983 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.90 85.0 8.07e-01 100.0% 91.6%
3941423 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.89 79.0 7.85e-01 93.9% 95.3%
136649 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.88 81.0 7.67e-01 97.6% 84.2%
3984933 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.86 81.0 7.85e-01 100.0% 97.8%
5021185 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.70 57.0 4.42e-01 87.8% 66.9%
4010974 5.1.5.165 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Rrn6_beta-prop 0.68 49.0 3.00e-01 74.4% 40.0%
3320880 2004.1.1.299 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.66 46.0 3.25e-01 73.2% 84.6%
5053329 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 53.0 4.64e-01 86.6% 81.7%
4548716 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.64 47.0 4.41e-01 78.0% 90.0%
4258974 223.2.1.23 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.64 52.0 4.15e-01 89.0% 51.5%
4609775 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.63 46.0 4.43e-01 78.0% 92.6%
4066174 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.63 46.0 4.26e-01 78.0% 87.6%
4383423 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.63 46.0 4.42e-01 78.0% 93.7%
4201328 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.63 46.0 4.40e-01 78.0% 92.6%
4928046 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 42.0 3.78e-01 70.7% 55.0%
396 2.2.1.8 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.60 44.0 4.18e-01 78.0% 66.3%
4662143 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 51.0 3.72e-01 93.9% 38.6%
4083184 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 42.0 4.04e-01 78.0% 88.0%
3748155 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 51.0 3.78e-01 93.9% 42.5%
3815770 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 44.0 3.57e-01 81.7% 98.2%
4073485 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 42.0 3.96e-01 78.0% 86.7%
3178555 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.51e-01 78.0% 96.5%
3384812 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 44.0 3.15e-01 82.9% 69.8%
4297175 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 41.0 4.06e-01 78.0% 88.9%
3724001 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 43.0 3.82e-01 84.1% 96.9%
5002490 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.57 40.0 2.63e-01 74.4% 18.7%
3786356 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.56 43.0 3.98e-01 84.1% 79.1%
3616431 5.1.4.103 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DCAF17 0.56 50.0 3.06e-01 97.6% 33.7%
4303869 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 41.0 4.00e-01 78.0% 87.8%
3682839 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.56 45.0 3.09e-01 89.0% 38.4%
3574559 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 45.0 3.86e-01 87.8% 93.8%
3789793 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 2.52e-01 86.6% 10.3%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 44.0 4.59e-01 90.2% 100.0%
3441510 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 43.0 3.10e-01 89.0% 39.3%
3692667 5.1.4.223 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.54 45.0 2.98e-01 100.0% 71.1%
3833570 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 45.0 3.29e-01 93.9% 86.7%
5076410 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.54 40.0 2.64e-01 79.3% 57.3%
3445792 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 42.0 2.79e-01 89.0% 23.9%
167439 705.1.1.1 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.53 38.0 3.46e-01 75.6% 92.8%
3924096 5.1.4.102 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 0.53 41.0 2.81e-01 84.1% 27.3%
3534391 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 46.0 3.52e-01 100.0% 76.3%
3462291 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.51 43.0 3.01e-01 96.3% 40.1%
3738698 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.51 43.0 3.77e-01 90.2% 80.0%
3579622 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 37.0 3.36e-01 76.8% 84.5%
3466381 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 40.0 3.68e-01 87.8% 81.8%
3467472 5.1.5.146 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.51 43.0 2.98e-01 96.3% 41.7%
4989633 3891.1.1.0 a+b two layers › Archaea-specific ribosomal protein L46a › Archaea-specific ribosomal protein L46a › Archaea-specific ribosomal protein L46a 0.50 36.0 3.68e-01 75.6% 97.5%
4590247 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.50 43.0 4.40e-01 97.6% 98.8%
D2 high residues 105-182
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.90 85.0 7.65e-01 98.7% 81.0%
2kd1A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.90 85.0 7.21e-01 100.0% 70.3%
2kj9A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.87 81.0 6.93e-01 100.0% 69.5%
2kj5A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.87 80.0 6.94e-01 100.0% 69.8%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.87 80.0 7.81e-01 100.0% 96.5%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.84 77.0 6.62e-01 100.0% 69.5%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.77 67.0 6.33e-01 96.2% 86.2%
3sf6A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.68 48.0 4.03e-01 73.1% 48.8%
1e6bA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 37.0 3.31e-01 75.6% 40.5%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.60 35.0 3.20e-01 100.0% 42.5%
3v1vA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 52.0 3.54e-01 100.0% 39.4%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 4.10e-01 88.5% 58.4%
4cs9B02 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.59 46.0 4.25e-01 98.7% 63.6%
3kevA02 1.10.238.200 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain 0.57 39.0 3.74e-01 96.2% 58.9%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 47.0 4.38e-01 92.3% 79.6%
2ygwA01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.55 43.0 3.53e-01 85.9% 82.4%
7k2tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 3.06e-01 83.3% 37.1%
6xgzE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 2.97e-01 83.3% 36.0%
2rcnA03 1.10.40.50 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 0.54 38.0 4.18e-01 100.0% 95.2%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 43.0 2.86e-01 98.7% 55.8%
1g6hA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.20e-01 100.0% 47.6%
7tchB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.79e-01 83.3% 36.4%
3tuiD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 2.89e-01 87.2% 42.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946053 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.96 91.0 7.45e-01 100.0% 62.3%
3957640 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.94 90.0 8.10e-01 100.0% 81.0%
4004726 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.93 88.0 7.57e-01 100.0% 70.4%
3588691 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.93 87.0 7.76e-01 100.0% 80.0%
3979029 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.92 87.0 7.91e-01 100.0% 82.0%
3978543 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.92 86.0 7.52e-01 100.0% 71.8%
3947779 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.92 86.0 7.50e-01 100.0% 72.7%
3948596 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.91 86.0 7.41e-01 100.0% 70.4%
4007795 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.91 86.0 7.39e-01 100.0% 71.3%
4233271 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.91 86.0 7.52e-01 100.0% 80.0%
4437317 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.91 86.0 7.66e-01 100.0% 75.2%
3589750 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.91 86.0 7.66e-01 100.0% 76.2%
3965042 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.91 85.0 7.34e-01 100.0% 71.3%
3984910 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.91 86.0 7.77e-01 100.0% 79.0%
3979101 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.91 85.0 7.21e-01 100.0% 70.0%
3587366 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.91 86.0 7.75e-01 100.0% 80.0%
3165066 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.90 85.0 7.18e-01 100.0% 66.7%
170034 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.90 85.0 7.40e-01 100.0% 75.5%
3946029 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.90 84.0 7.25e-01 100.0% 71.3%
4034068 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.89 83.0 7.57e-01 100.0% 82.0%
4004359 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.89 83.0 7.04e-01 100.0% 71.7%
4172485 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.89 83.0 7.25e-01 100.0% 75.5%
3964154 186.1.1.15 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Int_N 0.88 81.0 7.40e-01 100.0% 80.0%
135076 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.87 80.0 7.12e-01 100.0% 75.0%
134568 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.87 80.0 7.39e-01 100.0% 83.7%
4566550 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 75.0 6.89e-01 100.0% 84.0%
5033941 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.70 54.0 5.62e-01 82.1% 100.0%
4087673 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.69 63.0 5.82e-01 100.0% 93.0%
4055381 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.68 61.0 5.69e-01 98.7% 98.9%
4265681 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.68 61.0 5.63e-01 100.0% 93.0%
4405947 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.68 61.0 5.60e-01 100.0% 94.0%
4431607 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.65 58.0 5.34e-01 100.0% 93.0%
3794203 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.65 47.0 4.64e-01 78.2% 87.1%
3682087 101.1.1.19 alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.65 56.0 4.37e-01 100.0% 56.1%
3622876 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.64 45.0 3.83e-01 75.6% 45.2%
3350996 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 54.0 4.93e-01 100.0% 71.4%
5002845 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.62 43.0 3.75e-01 93.6% 46.7%
3914401 109.4.1.339 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC-Trs85 0.60 42.0 3.24e-01 73.1% 98.3%
3296571 630.1.1.1 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.59 40.0 3.14e-01 70.5% 86.1%
3888824 601.1.2.11 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › CD20 0.58 48.0 3.93e-01 93.6% 90.0%
None 0.57 46.0 3.17e-01 87.2% 37.0%
3880840 375.1.1.246 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook 0.56 37.0 3.39e-01 100.0% 52.0%
3955629 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.54 35.0 3.29e-01 100.0% 52.0%
5071471 3003.1.1.1 a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N 0.54 39.0 3.65e-01 79.5% 82.9%
4203130 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 38.0 3.39e-01 89.7% 50.4%
4387971 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.54 48.0 3.35e-01 100.0% 46.0%
4953661 606.1.1.1 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.54 43.0 3.81e-01 85.9% 81.8%
4505595 605.6.1.0 alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.52 38.0 3.57e-01 79.5% 78.0%
3507262 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.51 41.0 3.61e-01 100.0% 58.3%
5057068 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.51 36.0 3.38e-01 75.6% 98.0%
4974010 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 45.0 3.21e-01 100.0% 45.5%
3418714 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.51 42.0 2.83e-01 100.0% 22.1%
3766939 2006.1.1.9 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › UMPH-1 0.50 42.0 2.91e-01 96.2% 94.9%
D3 high residues 211-337
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.85 81.0 6.53e-01 100.0% 78.3%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.84 76.0 6.77e-01 100.0% 71.2%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.82 78.0 6.43e-01 100.0% 82.9%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.81 76.0 6.79e-01 100.0% 86.1%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.81 77.0 6.85e-01 100.0% 83.0%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.77 66.0 6.11e-01 100.0% 73.0%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.72 58.0 5.83e-01 84.3% 91.3%
4dwpA02 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.72 66.0 5.42e-01 100.0% 68.7%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 31.0 3.74e-01 98.4% 81.7%
1xwyA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 39.0 3.09e-01 78.7% 98.5%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.52 29.0 3.24e-01 81.1% 67.0%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 45.0 4.35e-01 100.0% 93.0%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.50 44.0 4.02e-01 100.0% 78.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946063 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 83.0 7.02e-01 100.0% 73.8%
4380833 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.37e-01 100.0% 79.4%
4007467 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 6.63e-01 100.0% 69.1%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 81.0 7.18e-01 100.0% 87.4%
4928138 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 78.0 6.56e-01 96.1% 87.0%
3964171 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 80.0 7.09e-01 100.0% 78.7%
3942448 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 71.0 6.65e-01 87.4% 98.7%
4314510 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 68.0 7.29e-01 84.3% 99.1%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 79.0 7.04e-01 100.0% 74.1%
3945675 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 70.0 6.79e-01 87.4% 96.4%
4522024 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 68.0 6.43e-01 85.0% 96.0%
3588206 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 69.0 6.53e-01 87.4% 92.7%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 78.0 6.84e-01 100.0% 76.7%
3969115 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 63.0 6.87e-01 85.0% 95.2%
3964657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 77.0 6.60e-01 100.0% 75.9%
3587110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 68.0 6.37e-01 85.8% 90.7%
5083074 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 67.0 6.32e-01 85.0% 92.7%
4930303 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 68.0 7.18e-01 86.6% 95.7%
3965072 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 68.0 6.79e-01 85.8% 95.4%
4973226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 70.0 7.26e-01 89.8% 97.5%
4954714 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 69.0 6.07e-01 89.0% 98.3%
4999495 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 78.0 6.77e-01 100.0% 77.2%
4134015 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 66.0 6.14e-01 84.3% 96.1%
4999472 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 77.0 6.58e-01 100.0% 79.5%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 77.0 6.71e-01 100.0% 75.6%
4122043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 67.0 6.93e-01 86.6% 99.2%
4413773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 68.0 6.69e-01 88.2% 88.9%
4210863 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 66.0 6.62e-01 85.8% 90.0%
4043462 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 65.0 6.75e-01 84.3% 97.5%
4285602 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 66.0 6.63e-01 85.8% 91.5%
4004483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 75.0 6.50e-01 100.0% 75.8%
4453818 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 73.0 6.86e-01 96.1% 94.7%
4580960 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 66.0 6.38e-01 85.8% 90.7%
5052502 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 66.0 6.50e-01 86.6% 94.8%
4166118 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 67.0 6.57e-01 87.4% 99.3%
4936284 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 66.0 6.90e-01 85.8% 95.7%
4192665 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 66.0 6.80e-01 85.8% 97.5%
4183457 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 74.0 7.04e-01 100.0% 86.2%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 75.0 6.48e-01 100.0% 69.7%
3839627 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 65.0 6.44e-01 86.6% 95.6%
4028841 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 65.0 6.40e-01 85.8% 99.3%
5011490 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 66.0 6.22e-01 87.4% 94.0%
4312876 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 64.0 6.40e-01 85.0% 97.7%
4998701 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 74.0 6.48e-01 100.0% 80.0%
4981577 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 66.0 6.65e-01 87.4% 94.4%
4428937 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 65.0 6.75e-01 87.4% 97.5%
5052541 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 65.0 6.62e-01 87.4% 99.2%
3586881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 65.0 6.10e-01 86.6% 97.3%
5037644 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 64.0 6.58e-01 85.0% 94.2%
4004361 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 63.0 6.16e-01 83.5% 94.8%
4095013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 65.0 6.43e-01 88.2% 96.3%
4969226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 65.0 6.44e-01 88.2% 100.0%
5027341 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 73.0 6.72e-01 100.0% 83.1%
3975337 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 64.0 6.27e-01 86.6% 98.5%
4954764 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 60.0 6.52e-01 85.8% 97.1%
3587645 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 65.0 6.38e-01 88.2% 100.0%
5032561 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 60.0 6.49e-01 83.5% 98.1%
4034370 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 63.0 6.47e-01 86.6% 99.2%
4965845 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.13e-01 100.0% 81.1%
4004713 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 71.0 6.96e-01 99.2% 94.8%
3980071 101.1.8.9 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Integrase_1 0.74 68.0 6.11e-01 100.0% 86.9%
4410774 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.70 54.0 5.68e-01 84.3% 90.4%