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MF150911.1__ASN73072.1__R2B_p035__00035

Bact-Vir

MF150911.1__ASN73072.1__R2B_p035__00035

Identity

Accession:
MF150911 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ralstonia_phage_DU_RP_II

TaxID: 2022331

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-82
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rzsA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 62.0 6.41e-01 95.5% 83.6%
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 63.0 6.38e-01 100.0% 86.2%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 56.0 5.79e-01 100.0% 95.0%
2hinA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 65.0 6.50e-01 100.0% 100.0%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 56.0 5.65e-01 100.0% 90.9%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 49.0 4.50e-01 100.0% 58.1%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 58.0 5.58e-01 100.0% 89.5%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 48.0 4.90e-01 83.3% 81.5%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.64 51.0 4.06e-01 90.9% 67.6%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 50.0 4.82e-01 100.0% 75.0%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 48.0 4.90e-01 92.4% 92.3%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.59 44.0 4.04e-01 80.3% 83.9%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 44.0 4.12e-01 87.9% 77.4%
7qv0F01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 44.0 4.17e-01 89.4% 80.2%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 43.0 3.69e-01 87.9% 78.3%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.56 38.0 3.45e-01 72.7% 67.4%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.81e-01 78.8% 82.5%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 45.0 3.60e-01 93.9% 63.6%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 40.0 4.12e-01 87.9% 82.0%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 44.0 2.81e-01 93.9% 36.8%
4hg1A00 3.40.1580.30 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Domain of unknown function (DUF5066) 0.55 40.0 2.88e-01 80.3% 33.8%
6bmeA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 44.0 3.72e-01 95.5% 83.5%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 36.0 3.85e-01 77.3% 78.9%
3f8tA01 1.10.260.200 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.54 41.0 3.84e-01 83.3% 91.7%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.53 41.0 3.21e-01 89.4% 73.3%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 42.0 4.01e-01 93.9% 76.9%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.52 43.0 3.26e-01 98.5% 36.1%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 35.0 3.48e-01 75.8% 82.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004322 101.1.4.24 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.82 63.0 6.04e-01 100.0% 72.0%
2389360 101.1.4.24 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.75 57.0 5.74e-01 100.0% 83.1%
3164312 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 60.0 5.62e-01 100.0% 73.8%
4993127 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.65 57.0 5.26e-01 100.0% 81.2%
4933148 101.1.4.96 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PolC_DP2_central 0.64 52.0 4.79e-01 100.0% 67.8%
5030004 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.58 45.0 3.85e-01 84.8% 54.5%
5058627 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.57 44.0 4.49e-01 86.4% 95.4%
4973530 101.1.1.9 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.57 45.0 4.18e-01 86.4% 70.6%
3757733 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.57 48.0 3.31e-01 100.0% 61.0%
4993589 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.56 46.0 3.64e-01 93.9% 94.0%
5003376 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.11e-01 87.9% 65.6%
5042222 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 47.0 4.39e-01 98.5% 85.9%
4952541 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 45.0 3.94e-01 90.9% 62.0%
3790359 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 34.0 3.17e-01 74.2% 48.2%
4038003 632.2.1.4 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like 0.53 36.0 3.55e-01 87.9% 64.0%
3702846 308.1.1.1 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.52 42.0 4.20e-01 98.5% 90.0%
5054075 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.52 41.0 4.31e-01 92.4% 100.0%
3594075 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.50 40.0 3.86e-01 98.5% 78.8%