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MF155946.1__ASR75599.1__SEA_MILDRED21_241__00191

Bact-Vir

MF155946.1__ASR75599.1__SEA_MILDRED21_241__00191

Identity

Accession:
MF155946 ↗
Kingdom:
phage

Quality

95.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Samistivirus› Streptomyces_phage_Mildred21

TaxID: 2023959

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-65
PDB
Domain cluster: rep: MH576968.1__AXH67380.1__SEA_WOFFORD_244__00199__D5-64
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 4.98e-01 100.0% 47.0%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 49.0 5.15e-01 77.0% 75.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 47.0 4.38e-01 73.8% 55.4%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 65.0 4.73e-01 100.0% 50.3%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 63.0 5.25e-01 100.0% 62.5%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.69 64.0 4.17e-01 100.0% 31.2%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.69 63.0 4.69e-01 100.0% 50.0%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 61.0 5.07e-01 100.0% 65.4%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 62.0 4.60e-01 100.0% 50.3%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 60.0 5.88e-01 100.0% 91.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.39e-01 100.0% 80.8%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 46.0 4.23e-01 75.4% 92.6%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 46.0 4.78e-01 95.1% 87.5%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 45.0 4.72e-01 96.7% 89.3%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 41.0 3.16e-01 72.1% 30.3%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 43.0 4.59e-01 95.1% 92.3%
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 42.0 3.64e-01 75.4% 78.2%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 53.0 4.33e-01 98.4% 60.6%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.78e-01 73.8% 94.9%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.07e-01 96.7% 26.1%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 44.0 4.47e-01 95.1% 89.8%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 44.0 3.21e-01 88.5% 51.9%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.77e-01 95.1% 88.0%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 40.0 3.36e-01 78.7% 89.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 36.0 3.34e-01 96.7% 52.5%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.54 37.0 3.98e-01 85.2% 88.0%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 43.0 3.83e-01 91.8% 94.5%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 42.0 3.28e-01 88.5% 88.7%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.52 43.0 3.43e-01 95.1% 95.5%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.52 35.0 2.44e-01 72.1% 20.0%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 32.0 3.23e-01 72.1% 57.6%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.51 37.0 2.77e-01 78.7% 39.2%
6z30A02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 43.0 3.41e-01 98.4% 67.6%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 39.0 2.56e-01 85.2% 49.0%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 34.0 2.97e-01 70.5% 47.4%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 38.0 2.55e-01 85.2% 49.5%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 37.0 2.69e-01 83.6% 40.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 68.0 6.48e-01 100.0% 90.0%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 58.0 5.71e-01 100.0% 81.5%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 58.0 5.70e-01 100.0% 81.5%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 64.0 5.84e-01 100.0% 73.8%
4014568 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.72 54.0 5.63e-01 90.2% 87.3%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.70 56.0 5.42e-01 100.0% 77.1%
2410381 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 63.0 5.81e-01 100.0% 78.5%
3182097 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 53.0 5.18e-01 80.3% 75.4%
3992087 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.69 63.0 4.51e-01 100.0% 44.1%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.57e-01 100.0% 77.0%
3023952 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.02e-01 100.0% 71.7%
4480612 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 52.0 4.65e-01 83.6% 90.0%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.68 62.0 5.95e-01 100.0% 87.1%
3471772 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.68 60.0 5.28e-01 100.0% 83.3%
3707346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.43e-01 100.0% 79.5%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 60.0 4.51e-01 100.0% 42.1%
3505947 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.67 59.0 4.75e-01 100.0% 77.5%
3631731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 60.0 4.45e-01 100.0% 54.7%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 57.0 4.52e-01 100.0% 58.5%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.65 56.0 4.49e-01 100.0% 58.5%
3208838 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 58.0 4.31e-01 100.0% 52.9%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 57.0 5.10e-01 100.0% 76.5%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.63 58.0 4.55e-01 100.0% 63.3%
3692564 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.63 48.0 2.89e-01 82.0% 23.7%
3197234 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.63 47.0 3.92e-01 82.0% 89.1%
3706361 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.38e-01 100.0% 64.8%
3437430 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.61 45.0 4.48e-01 93.4% 75.4%
4469294 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.60 47.0 3.91e-01 91.8% 74.2%
3961157 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.57 43.0 3.54e-01 83.6% 67.5%
5063726 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 43.0 3.74e-01 83.6% 54.5%
3862470 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 50.0 4.02e-01 100.0% 52.5%
3612689 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 3.84e-01 91.8% 98.2%
3966871 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.56 46.0 3.69e-01 95.1% 49.2%
3722829 9.23.1.5 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_5 0.55 45.0 3.41e-01 95.1% 64.8%
3257301 211.1.1.2 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › YecM 0.54 42.0 3.54e-01 88.5% 86.4%
3389371 3775.1.1.1 ↗ beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.54 44.0 2.76e-01 96.7% 28.6%
3925915 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.54 38.0 4.07e-01 90.2% 92.0%
3996695 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.53 38.0 3.96e-01 90.2% 85.5%
3704345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 31.0 3.04e-01 100.0% 55.4%
4062730 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.51 36.0 3.40e-01 78.7% 63.7%