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MF172979.1__ASD51065.1__SER90K_8__00008
Bact-VirMF172979.1__ASD51065.1__SER90K_8__00008
Identity
- Accession:
- MF172979 ↗
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-66
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18813.7 best | PBECR4 | 28.8 | 2.00e-06 | 100.0% | 29.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.67 | 34.0 | 2.49e-01 | 95.5% | 18.1% |
| 2wdqA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.65 | 30.0 | 3.65e-01 | 72.7% | 63.4% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.62 | 26.0 | 2.93e-01 | 77.3% | 43.4% |
| 1zoyA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.54 | 31.0 | 3.14e-01 | 77.3% | 53.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981833 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.57 | 40.0 | 3.69e-01 | 72.7% | 60.0% |
| 3935356 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.53 | 29.0 | 2.40e-01 | 98.5% | 25.8% |
D2
medium
residues 67-116
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dapA02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.66 | 45.0 | 3.21e-01 | 74.0% | 23.7% |
| 4qboA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 40.0 | 3.31e-01 | 70.0% | 35.9% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 34.0 | 3.00e-01 | 86.0% | 31.9% |
| 1x3zA04 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 43.0 | 4.28e-01 | 88.0% | 90.7% |
| 3tzuA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.56 | 40.0 | 3.00e-01 | 78.0% | 30.7% |
| 5b3pA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.56 | 46.0 | 3.51e-01 | 98.0% | 65.7% |
| 3ggmA00 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.56 | 38.0 | 3.46e-01 | 74.0% | 53.3% |
| 2edgA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 39.0 | 2.89e-01 | 78.0% | 30.8% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 36.0 | 2.46e-01 | 70.0% | 21.4% |
| 4f7aA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 2.53e-01 | 100.0% | 45.4% |
| 6p66D01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.53 | 35.0 | 2.93e-01 | 72.0% | 33.9% |
| 4mp8A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.52 | 39.0 | 2.88e-01 | 88.0% | 77.6% |
| 1y88A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 34.0 | 2.72e-01 | 72.0% | 32.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955243 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 42.0 | 2.89e-01 | 70.0% | 19.5% |
| 4115308 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.62 | 43.0 | 3.07e-01 | 74.0% | 23.3% |
| 4941784 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 45.0 | 3.41e-01 | 80.0% | 55.6% |
| 1348988 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 40.0 | 3.32e-01 | 70.0% | 35.9% |
| 3243400 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 46.0 | 3.09e-01 | 84.0% | 74.9% |
| 5032035 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 43.0 | 3.85e-01 | 72.0% | 51.4% |
| 4058415 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.61 | 42.0 | 3.06e-01 | 74.0% | 24.7% |
| 3988717 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.61 | 40.0 | 3.15e-01 | 76.0% | 30.9% |
| 4972340 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.59 | 36.0 | 3.39e-01 | 72.0% | 47.7% |
| 4927077 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 40.0 | 2.73e-01 | 72.0% | 17.1% |
| None | — | 0.57 | 46.0 | 2.71e-01 | 100.0% | 66.9% | |
| 4190563 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.56 | 39.0 | 2.87e-01 | 76.0% | 25.2% |
| 3178876 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.56 | 44.0 | 2.57e-01 | 90.0% | 84.1% |
| 3657655 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.55 | 37.0 | 3.31e-01 | 82.0% | 46.3% |
| 1933320 | 2008.1.1.76 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SwaI-like | 0.53 | 41.0 | 2.75e-01 | 90.0% | 41.2% |
| 3516583 | 3534.1.1.3 ↗ | beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 | 0.53 | 42.0 | 4.13e-01 | 94.0% | 100.0% |
| 4155974 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.52 | 35.0 | 2.69e-01 | 76.0% | 24.7% |
| 3446499 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.52 | 39.0 | 3.07e-01 | 86.0% | 68.3% |
| 4676512 | 2008.1.1.165 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_MjaI | 0.51 | 34.0 | 2.95e-01 | 72.0% | 38.9% |
| 3785976 | 7512.1.1.12 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C | 0.51 | 38.0 | 2.67e-01 | 92.0% | 44.8% |
| 5043376 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.51 | 37.0 | 2.84e-01 | 86.0% | 95.9% |