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MF185720.1__ASR85878.1__SEA_GUILLSMINGER_91__00090

Bact-Vir

MF185720.1__ASR85878.1__SEA_GUILLSMINGER_91__00090

Identity

Accession:
MF185720 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kratiovirus› Mycobacterium_phage_Guillsminger

TaxID: 2015845

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-133_366-384
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13701.13 best DDE_Tnp_1_4 51.7 6.20e-14 84.2% 24.3%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.58 37.0 4.53e-01 72.9% 100.0%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.58 32.0 3.25e-01 89.5% 53.4%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.54 38.0 3.45e-01 71.4% 90.3%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 36.0 3.24e-01 74.4% 65.1%
3khkB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.50 35.0 3.38e-01 72.2% 98.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4008545 101.1.1.271 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_1_assoc 0.78 54.0 6.37e-01 72.9% 100.0%
5046890 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 3.96e-01 90.2% 69.3%
3634514 3403.1.1.6 ↗ alpha bundles › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › SF3a60_bindingd,SF3A3 0.52 44.0 3.37e-01 91.0% 40.6%
D2 medium residues 134-221_353-365
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13701.13 best DDE_Tnp_1_4 45.5 4.70e-12 92.1% 16.7%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gniA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.74 41.0 4.47e-01 83.2% 64.4%
3d2fA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 42.0 4.40e-01 91.1% 71.0%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 47.0 4.06e-01 81.2% 87.8%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 43.0 2.84e-01 70.3% 22.3%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.62 49.0 3.91e-01 83.2% 58.5%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 43.0 2.88e-01 71.3% 21.4%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.61 40.0 3.58e-01 81.2% 47.2%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.60 53.0 4.05e-01 99.0% 87.1%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.60 37.0 3.33e-01 87.1% 44.1%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.59 53.0 4.02e-01 99.0% 86.1%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 40.0 4.50e-01 87.1% 94.7%
3eqvA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 40.0 3.67e-01 83.2% 54.1%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 41.0 2.79e-01 77.2% 25.2%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 48.0 4.36e-01 96.0% 92.0%
5vyqA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.55 47.0 3.92e-01 94.1% 65.5%
1zghA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.55 47.0 4.02e-01 94.1% 68.5%
3wuhB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 49.0 4.04e-01 99.0% 73.7%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.54 42.0 4.00e-01 87.1% 87.2%
5tfqA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 35.0 2.59e-01 80.2% 24.9%
4nv1E01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.51 44.0 3.70e-01 98.0% 63.4%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.27e-01 79.2% 86.8%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.36e-01 93.1% 68.5%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.51 40.0 3.77e-01 87.1% 81.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942981 2484.1.1.269 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 0.80 76.0 4.99e-01 100.0% 59.2%
5078190 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.78 71.0 5.15e-01 99.0% 75.5%
4958777 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.72 66.0 4.55e-01 99.0% 61.6%
3258745 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 62.0 4.31e-01 96.0% 48.9%
3391590 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.69 64.0 5.09e-01 100.0% 78.9%
5027997 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.68 63.0 4.54e-01 98.0% 61.8%
3837766 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.68 62.0 4.63e-01 99.0% 67.3%
3908711 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.67 61.0 4.77e-01 100.0% 76.3%
3434205 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.67 61.0 4.70e-01 99.0% 74.1%
4940124 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.67 62.0 4.28e-01 98.0% 52.8%
3678231 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 61.0 4.33e-01 99.0% 59.7%
3932900 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.67 52.0 4.23e-01 83.2% 54.7%
3422761 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 61.0 4.30e-01 99.0% 54.3%
3907497 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.66 60.0 4.65e-01 99.0% 75.5%
3875118 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.66 61.0 4.33e-01 100.0% 52.8%
3907370 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.66 60.0 4.27e-01 100.0% 55.6%
3254993 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 58.0 4.23e-01 97.0% 51.1%
4610521 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.65 60.0 4.76e-01 100.0% 76.5%
3905610 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.65 60.0 4.08e-01 100.0% 49.6%
3340619 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 57.0 4.22e-01 97.0% 58.1%
3815516 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.64 58.0 4.76e-01 97.0% 91.4%
4451157 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.64 59.0 4.47e-01 100.0% 69.1%
3449593 4325.1.1.6 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DDE_Tnp_4 0.64 51.0 5.11e-01 87.1% 90.5%
3897539 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.63 56.0 3.78e-01 99.0% 85.6%
3900243 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.63 53.0 4.60e-01 91.1% 95.5%
3303284 4325.1.1.6 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DDE_Tnp_4 0.62 50.0 5.07e-01 86.1% 93.0%
4010500 7503.1.1.24 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF25851 0.62 48.0 4.21e-01 83.2% 74.0%
3224865 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.62 55.0 4.09e-01 100.0% 91.7%
3925946 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 44.0 2.91e-01 73.3% 20.8%
3926548 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.61 52.0 3.80e-01 95.0% 74.7%
4530539 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.60 43.0 3.25e-01 87.1% 31.0%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.60 46.0 3.97e-01 81.2% 91.6%
3389074 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 43.0 3.73e-01 75.2% 78.1%
4011082 5.1.4.514 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ 0.58 41.0 2.57e-01 72.3% 24.4%
3927366 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.58 47.0 4.12e-01 88.1% 89.3%
3457141 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 47.0 3.32e-01 90.1% 92.8%
3487306 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 41.0 3.56e-01 76.2% 80.6%
3484787 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 39.0 3.29e-01 73.3% 82.3%
3360897 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 51.0 3.85e-01 100.0% 46.1%
3465790 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.55 37.0 2.92e-01 71.3% 33.0%
3829679 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.54 40.0 2.68e-01 77.2% 38.0%
3410461 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 3.09e-01 90.1% 91.3%
3179848 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.54 37.0 3.38e-01 83.2% 51.1%
3595383 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 38.0 3.12e-01 75.2% 67.5%
3408695 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 35.0 3.64e-01 88.1% 73.7%
3932155 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 39.0 2.86e-01 88.1% 29.5%
3654889 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.51 40.0 3.41e-01 85.1% 64.7%
3925444 5087.3.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.51 41.0 3.19e-01 85.1% 84.2%
3803056 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 37.0 2.70e-01 76.2% 40.0%
3891207 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 39.0 3.63e-01 82.2% 74.4%
D3 medium residues 222-352
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13701.13 best DDE_Tnp_1_4 35.2 6.50e-09 100.0% 26.1%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.72 68.0 5.38e-01 100.0% 54.5%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.30e-01 75.6% 89.2%
2ebeA00 3.30.70.2290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) 0.51 27.0 3.00e-01 70.2% 61.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942981 2484.1.1.269 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 0.83 73.0 5.06e-01 100.0% 32.4%
5021851 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.82 64.0 4.55e-01 100.0% 30.4%
4946348 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.82 62.0 4.60e-01 100.0% 34.2%
4958703 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.78 59.0 4.29e-01 100.0% 31.6%
3914941 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.77 48.0 3.54e-01 100.0% 26.3%
4992937 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.76 66.0 4.75e-01 100.0% 34.8%
4966168 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 54.0 3.87e-01 100.0% 27.8%
4944869 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 54.0 5.49e-01 95.4% 74.6%
4961941 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 61.0 4.25e-01 100.0% 29.3%
5017700 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.74 70.0 5.14e-01 100.0% 44.8%
5083024 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 65.0 4.44e-01 100.0% 28.8%
3957639 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.73 69.0 5.16e-01 100.0% 45.2%
3961876 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 68.0 4.87e-01 100.0% 37.4%
3962355 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.72 67.0 5.76e-01 100.0% 67.0%
215919 2484.1.1.19 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1,Tnp_DNA_bind 0.71 66.0 4.43e-01 100.0% 31.1%
4142588 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.70 59.0 5.21e-01 88.5% 64.9%
5053278 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.67 63.0 4.43e-01 100.0% 35.7%
5002475 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.66 50.0 3.69e-01 100.0% 29.9%
3895909 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.62 54.0 4.11e-01 100.0% 42.9%
3920450 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.61 49.0 3.99e-01 96.2% 47.1%
3880867 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.60 52.0 3.62e-01 100.0% 30.0%
3736229 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.58 36.0 3.67e-01 72.5% 63.2%
3695026 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 34.0 3.59e-01 72.5% 63.0%
3423530 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.53 43.0 3.92e-01 87.0% 88.3%
3669361 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.53 42.0 3.94e-01 87.0% 91.2%
3205034 331.3.1.30 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.53 45.0 3.46e-01 92.4% 97.3%
3993477 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.84e-01 90.1% 90.0%
3462372 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.53 42.0 4.09e-01 86.3% 84.1%
3483890 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.52 41.0 3.93e-01 85.5% 88.7%
4182020 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.52 45.0 3.95e-01 100.0% 64.2%
4139946 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 45.0 3.27e-01 100.0% 97.0%
3785219 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.51 46.0 3.62e-01 100.0% 55.0%
3620795 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 41.0 3.95e-01 86.3% 85.3%
3928520 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 44.0 3.24e-01 96.9% 98.2%
3774464 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.51 41.0 3.87e-01 87.8% 90.6%
3400500 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.51 41.0 3.83e-01 87.8% 87.3%
3378739 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.50 31.0 3.73e-01 75.6% 95.2%
D4 medium residues 385-451
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13701.13 best DDE_Tnp_1_4 42.1 5.10e-11 100.0% 14.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y3mA02 3.30.1370.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.61 36.0 3.88e-01 91.0% 69.6%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.57 42.0 3.34e-01 79.1% 94.4%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 47.0 3.39e-01 98.5% 74.8%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.65e-01 97.0% 68.6%
7k98E03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.53 36.0 3.60e-01 98.5% 69.1%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.59e-01 77.6% 80.0%
3onmA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 45.0 4.03e-01 98.5% 87.5%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.35e-01 71.6% 97.6%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 41.0 3.06e-01 91.0% 66.0%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.51 36.0 3.24e-01 76.1% 60.4%
3h5xA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 39.0 3.30e-01 100.0% 48.3%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 42.0 3.49e-01 98.5% 52.1%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.48e-01 100.0% 67.1%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 36.0 2.63e-01 80.6% 43.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989542 2484.1.1.269 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 0.91 81.0 6.86e-01 98.5% 61.0%
3885541 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.63 43.0 4.36e-01 97.0% 72.3%
3288828 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.61 47.0 3.68e-01 88.1% 81.5%
3281159 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.59 45.0 3.54e-01 86.6% 81.2%
4979956 3236.1.1.5 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 0.59 48.0 3.01e-01 92.5% 86.0%
5050894 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.59 42.0 2.94e-01 77.6% 92.9%
3740385 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.57 49.0 3.75e-01 100.0% 55.9%
5043111 3542.1.1.2 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP 0.57 43.0 3.01e-01 83.6% 92.4%
3592606 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.55 41.0 3.10e-01 83.6% 86.5%
5063713 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 36.0 3.77e-01 98.5% 76.7%
4110276 1.1.3.4 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › SymE_toxin 0.54 29.0 2.92e-01 70.1% 48.6%
3966756 3226.1.1.1 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease 0.54 45.0 2.84e-01 100.0% 65.9%
3287378 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.54 46.0 3.16e-01 100.0% 96.9%
5060820 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.54 43.0 2.65e-01 92.5% 19.6%
5022826 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.52 36.0 3.66e-01 91.0% 73.8%
3466238 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.52 42.0 2.58e-01 91.0% 31.1%
3710097 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 2.86e-01 70.1% 52.1%
4941847 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 34.0 3.08e-01 95.5% 47.4%
3841412 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.52 37.0 3.18e-01 77.6% 56.5%
4941413 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 43.0 4.21e-01 100.0% 92.0%
1918436 6051.5.1.1 ↗ alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N 0.51 34.0 3.59e-01 97.0% 79.7%
5045315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.02e-01 74.6% 58.3%
5033726 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.50 32.0 2.82e-01 89.6% 43.0%
3841130 3226.1.1.3 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp 0.50 41.0 2.50e-01 98.5% 85.9%