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MF185725.1__ASX99175.1__SEA_TOPHAT_55__00055

Bact-Vir

MF185725.1__ASX99175.1__SEA_TOPHAT_55__00055

Identity

Accession:
MF185725 ↗
Kingdom:
phage

Quality

63.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-83
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.68 42.0 4.86e-01 98.4% 88.4%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.67 48.0 5.21e-01 90.2% 94.0%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 38.0 3.73e-01 88.5% 50.0%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 49.0 3.11e-01 78.7% 37.0%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.66 43.0 4.83e-01 85.2% 97.6%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.66 45.0 4.12e-01 88.5% 53.0%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 42.0 3.53e-01 98.4% 38.3%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.64 47.0 3.99e-01 80.3% 77.9%
7rpyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 48.0 4.16e-01 86.9% 96.1%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.62 47.0 3.51e-01 78.7% 42.4%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.62 42.0 4.62e-01 88.5% 97.7%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.62 43.0 4.67e-01 86.9% 97.8%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.62 52.0 3.78e-01 98.4% 89.1%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 49.0 4.20e-01 100.0% 55.8%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.23e-01 95.1% 33.6%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.59 50.0 3.37e-01 100.0% 31.5%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 50.0 3.22e-01 100.0% 39.9%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.59 50.0 3.89e-01 96.7% 62.3%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.16e-01 100.0% 37.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.65e-01 85.2% 66.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.82e-01 85.2% 72.8%
3mcpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 50.0 4.20e-01 100.0% 88.4%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 50.0 3.34e-01 100.0% 99.6%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 50.0 4.37e-01 100.0% 92.8%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 45.0 2.76e-01 86.9% 72.9%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 44.0 2.90e-01 96.7% 19.9%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.10e-01 100.0% 27.2%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.57 44.0 4.18e-01 85.2% 70.3%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.08e-01 100.0% 25.9%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.96e-01 95.1% 28.7%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.64e-01 85.2% 65.7%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.56 51.0 3.40e-01 100.0% 43.8%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.60e-01 93.4% 60.9%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.56 46.0 4.15e-01 96.7% 78.9%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.60e-01 93.4% 60.4%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 48.0 3.07e-01 98.4% 22.8%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.55 47.0 3.82e-01 100.0% 69.8%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.55 43.0 4.17e-01 95.1% 78.3%
2yzjA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.54 39.0 3.09e-01 78.7% 72.1%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.77e-01 90.2% 96.8%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 44.0 2.68e-01 93.4% 22.3%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 44.0 3.98e-01 96.7% 95.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 44.0 4.30e-01 96.7% 84.8%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.53e-01 100.0% 48.5%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.52e-01 93.4% 76.4%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.53 44.0 3.43e-01 96.7% 86.7%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 42.0 3.75e-01 100.0% 61.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.64e-01 98.4% 70.8%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 4.04e-01 98.4% 73.8%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 2.95e-01 100.0% 25.3%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.52e-01 82.0% 92.4%
1e94A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 39.0 2.88e-01 85.2% 37.4%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 42.0 3.31e-01 96.7% 42.9%
1j54A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 43.0 3.19e-01 100.0% 67.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.78e-01 86.9% 85.9%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 42.0 3.46e-01 96.7% 61.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1245465 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.75 49.0 5.27e-01 85.2% 82.0%
3847296 391.1.2.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › fn1 0.74 47.0 5.46e-01 85.2% 100.0%
3513418 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.72 50.0 5.61e-01 77.0% 100.0%
3623941 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.71 50.0 5.59e-01 78.7% 100.0%
3893497 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.71 45.0 5.21e-01 85.2% 100.0%
5051613 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 46.0 3.74e-01 100.0% 34.7%
4202831 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.71 50.0 5.56e-01 90.2% 100.0%
3915471 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.66 43.0 4.90e-01 82.0% 100.0%
3883146 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 45.0 4.96e-01 86.9% 97.8%
4141923 391.1.2.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › fn1 0.64 45.0 5.02e-01 90.2% 100.0%
4152365 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.64 44.0 4.84e-01 88.5% 97.8%
3571503 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.63 52.0 5.40e-01 95.1% 100.0%
3196528 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 49.0 4.94e-01 100.0% 86.7%
5041468 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 55.0 3.30e-01 100.0% 24.3%
3511590 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 47.0 4.00e-01 85.2% 69.5%
3515797 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.61 52.0 3.35e-01 96.7% 29.5%
4263140 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 44.0 4.20e-01 90.2% 67.1%
5052753 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 36.0 2.68e-01 98.4% 23.1%
3480221 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 46.0 4.51e-01 85.2% 93.8%
3231587 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 4.11e-01 86.9% 94.4%
5022798 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 43.0 2.60e-01 82.0% 10.0%
4994722 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.59 50.0 3.16e-01 98.4% 27.4%
3394537 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.78e-01 85.2% 76.4%
4134192 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.58 49.0 3.96e-01 93.4% 53.3%
4140248 5.1.4.577 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YqgU 0.58 51.0 3.28e-01 100.0% 39.4%
2320506 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 49.0 3.86e-01 100.0% 50.7%
3957008 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.58 50.0 3.71e-01 100.0% 47.1%
4083857 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 48.0 3.87e-01 100.0% 50.7%
3845022 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.58 52.0 2.98e-01 100.0% 13.9%
3465186 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.58 49.0 3.94e-01 100.0% 80.0%
4030120 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 2.66e-01 86.9% 16.0%
4002261 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 47.0 2.76e-01 96.7% 10.6%
None 0.57 50.0 3.07e-01 98.4% 20.5%
3478666 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 44.0 3.71e-01 85.2% 71.4%
3199763 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.57 45.0 3.57e-01 100.0% 42.4%
4965483 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.57 48.0 3.05e-01 100.0% 23.1%
5033616 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.56 50.0 3.26e-01 98.4% 92.6%
3519147 5.1.4.61 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.56 49.0 3.39e-01 98.4% 42.3%
None 0.56 47.0 3.04e-01 100.0% 25.8%
3387201 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.56 48.0 3.12e-01 100.0% 27.2%
5037801 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.82e-01 85.2% 85.4%
3177452 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 2.71e-01 98.4% 11.9%
3584249 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.55 42.0 3.51e-01 85.2% 68.2%
3241979 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 41.0 3.53e-01 85.2% 87.6%
4235146 129.1.1.2 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.54 36.0 2.80e-01 83.6% 29.7%
3624142 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 43.0 3.52e-01 100.0% 47.1%
4024503 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.86e-01 86.9% 93.8%
5014686 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.53 43.0 4.50e-01 90.2% 100.0%
3563619 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.53 44.0 3.34e-01 93.4% 64.0%
3673032 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 41.0 3.98e-01 91.8% 74.3%
3890751 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.75e-01 90.2% 61.1%
3576662 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.85e-01 93.4% 19.7%
4346133 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 44.0 3.50e-01 100.0% 43.8%
3484246 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 45.0 2.81e-01 96.7% 16.5%
3270895 304.107.1.5 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.53 45.0 3.72e-01 98.4% 69.6%
3594793 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.77e-01 93.4% 30.8%
4661020 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 2.92e-01 85.2% 49.1%
3484290 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.20e-01 95.1% 39.4%
4991056 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.51 32.0 3.37e-01 98.4% 69.1%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 43.0 3.45e-01 100.0% 69.2%
4017732 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.51 40.0 3.14e-01 91.8% 42.0%
3249763 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.19e-01 93.4% 65.5%
3748031 389.1.1.93 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ephrin_CRD 0.50 37.0 3.79e-01 82.0% 96.7%