←Back to structures
MF285618.1__ATA65451.1__2050HW_00116__00116
Bact-VirMF285618.1__ATA65451.1__2050HW_00116__00116
Identity
- Accession:
- MF285618 ↗
- Kingdom:
- phage
Quality
77.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Moabitevirus›
Serratia_phage_vB_SmaM__2050HW
TaxID: 2024252
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 48-119
Domain cluster:
rep: NC_061421.1__YP_010298790.1__MOC16_gp260__00153__D54-106
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 45.0 | 4.07e-01 | 72.2% | 67.3% |
| 2crhA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.63 | 45.0 | 4.11e-01 | 77.8% | 71.6% |
| 1wbaA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.63 | 48.0 | 3.61e-01 | 81.9% | 95.9% |
| 2ablA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 45.0 | 4.13e-01 | 77.8% | 76.3% |
| 2dx0A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 43.0 | 3.75e-01 | 73.6% | 90.6% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 45.0 | 4.06e-01 | 77.8% | 81.0% |
| 3c0bA02 | 3.30.420.190 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › conserved archaeal protein q6m145 | 0.62 | 50.0 | 3.57e-01 | 90.3% | 49.1% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.61 | 42.0 | 3.44e-01 | 72.2% | 56.8% |
| 1milA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 44.0 | 3.95e-01 | 77.8% | 66.3% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 43.0 | 4.74e-01 | 84.7% | 100.0% |
| 3us4A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 44.0 | 4.02e-01 | 79.2% | 75.3% |
| 3q41B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 45.0 | 3.37e-01 | 80.6% | 86.9% |
| 1ayaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 43.0 | 3.94e-01 | 79.2% | 72.3% |
| 2gsbA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 43.0 | 4.12e-01 | 77.8% | 88.1% |
| 1m61A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 43.0 | 3.89e-01 | 79.2% | 69.2% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 43.0 | 3.91e-01 | 79.2% | 74.8% |
| 2vifA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 43.0 | 3.60e-01 | 77.8% | 62.7% |
| 1nrvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 43.0 | 3.90e-01 | 79.2% | 76.0% |
| 2bbuA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 42.0 | 3.34e-01 | 77.8% | 50.6% |
| 2ci9B00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 42.0 | 3.84e-01 | 77.8% | 70.0% |
| 1z85A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.58 | 44.0 | 4.59e-01 | 83.3% | 100.0% |
| 2knoA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 43.0 | 3.81e-01 | 80.6% | 80.9% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 42.0 | 3.84e-01 | 79.2% | 76.0% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 49.0 | 3.88e-01 | 100.0% | 77.9% |
| 1rjaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 41.0 | 3.75e-01 | 77.8% | 71.0% |
| 5f7qC02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 45.0 | 3.53e-01 | 91.7% | 46.2% |
| 1k32A01 | 2.120.10.60 | Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain | 0.56 | 41.0 | 2.82e-01 | 79.2% | 31.2% |
| 6u1oA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 37.0 | 3.25e-01 | 86.1% | 45.0% |
| 2l3tA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 41.0 | 3.72e-01 | 79.2% | 63.0% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 40.0 | 3.58e-01 | 79.2% | 70.8% |
| 1rpyB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 40.0 | 3.87e-01 | 79.2% | 72.1% |
| 4r62A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 38.0 | 3.05e-01 | 75.0% | 86.6% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.54 | 42.0 | 3.73e-01 | 86.1% | 78.1% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 36.0 | 3.10e-01 | 75.0% | 50.4% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 41.0 | 2.84e-01 | 94.4% | 51.1% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 40.0 | 3.15e-01 | 91.7% | 59.4% |
| 4fdtB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 35.0 | 2.26e-01 | 73.6% | 89.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3215811 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.71 | 45.0 | 5.08e-01 | 83.3% | 85.5% |
| 3947985 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.67 | 53.0 | 5.37e-01 | 87.5% | 85.7% |
| 3502261 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.63 | 44.0 | 3.67e-01 | 77.8% | 40.0% |
| 3512463 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.63 | 46.0 | 3.98e-01 | 86.1% | 48.3% |
| 1343907 | 2484.1.1.23 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A | 0.62 | 50.0 | 3.62e-01 | 90.3% | 50.0% |
| 3883097 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.61 | 44.0 | 4.48e-01 | 77.8% | 78.6% |
| 3514123 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.61 | 44.0 | 3.75e-01 | 77.8% | 75.2% |
| 3842643 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.61 | 44.0 | 3.75e-01 | 79.2% | 60.0% |
| 3545796 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 44.0 | 3.79e-01 | 77.8% | 68.7% |
| 4032324 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.60 | 47.0 | 3.24e-01 | 86.1% | 28.1% |
| 2807015 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 44.0 | 3.81e-01 | 77.8% | 66.7% |
| 3213146 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 44.0 | 3.85e-01 | 79.2% | 69.1% |
| 3513932 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.60 | 42.0 | 3.68e-01 | 79.2% | 47.0% |
| 3903512 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 43.0 | 3.65e-01 | 77.8% | 64.8% |
| 3472650 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.61e-01 | 77.8% | 57.7% |
| 4602126 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 44.0 | 3.87e-01 | 80.6% | 70.9% |
| 4079647 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.90e-01 | 77.8% | 73.0% |
| 3912111 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.76e-01 | 79.2% | 67.8% |
| 3933443 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 42.0 | 4.25e-01 | 75.0% | 92.9% |
| 2987316 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.65e-01 | 77.8% | 61.2% |
| 3512674 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.54e-01 | 77.8% | 56.3% |
| 3628065 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.40e-01 | 79.2% | 47.5% |
| 3414351 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 40.0 | 3.11e-01 | 72.2% | 39.4% |
| 3755862 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.96e-01 | 79.2% | 74.7% |
| 3253803 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 42.0 | 3.98e-01 | 79.2% | 64.4% |
| 4871885 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 43.0 | 3.89e-01 | 80.6% | 70.3% |
| 3542444 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 43.0 | 3.39e-01 | 80.6% | 51.6% |
| 3726238 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 43.0 | 2.72e-01 | 83.3% | 39.2% |
| 3470987 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 40.0 | 3.48e-01 | 77.8% | 68.3% |
| 2322691 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 40.0 | 3.48e-01 | 77.8% | 60.7% |
| 3766764 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.55 | 40.0 | 2.72e-01 | 79.2% | 27.7% |
| 3481722 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 39.0 | 3.53e-01 | 77.8% | 75.2% |
| 3241996 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 38.0 | 3.42e-01 | 79.2% | 50.0% |
| 3415161 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 45.0 | 3.17e-01 | 100.0% | 46.5% |
| 3966067 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.53 | 42.0 | 2.82e-01 | 86.1% | 24.7% |
| 3220069 | 5.1.4.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N | 0.51 | 41.0 | 2.68e-01 | 90.3% | 24.6% |
D2
medium
residues 120-192
Domain cluster:
rep: MF034659.1__ARV77571.1__X__00007__D301-386
D3
medium
residues 193-340
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zppA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.61 | 57.0 | 4.05e-01 | 100.0% | 38.5% |
| 2jaxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 30.0 | 3.24e-01 | 83.1% | 58.4% |
| 2a7kB01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 45.0 | 4.10e-01 | 96.6% | 69.0% |
| 4jwvA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 44.0 | 4.01e-01 | 96.6% | 68.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1725727 | 207.2.1.27 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Phage_spike_2 | 0.63 | 59.0 | 3.95e-01 | 100.0% | 32.8% |
| 4034497 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.63 | 59.0 | 4.30e-01 | 99.3% | 51.0% |
| 3987209 | 207.2.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix | 0.61 | 57.0 | 3.95e-01 | 100.0% | 34.3% |
| 3894677 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.57 | 35.0 | 3.46e-01 | 95.9% | 56.2% |
| 3849759 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.55 | 35.0 | 3.36e-01 | 85.1% | 53.1% |
| 4522677 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.55 | 50.0 | 3.57e-01 | 100.0% | 75.3% |
| 4079489 | 207.2.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 | 0.55 | 50.0 | 3.58e-01 | 100.0% | 75.6% |