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MF285618.1__ATA65645.1__2050HW_00310__00310

Bact-Vir

MF285618.1__ATA65645.1__2050HW_00310__00310

Identity

Accession:
MF285618 ↗
Kingdom:
phage

Quality

57.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Moabitevirus› Serratia_phage_vB_SmaM__2050HW

TaxID: 2024252

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-212
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25677.3 best Chimallin_Phikzvirus 88.2 6.60e-25 99.4% 25.5%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7r7eA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.64 43.0 4.91e-01 85.3% 93.3%
3kxwA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.62 42.0 4.68e-01 79.8% 88.7%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 26.0 3.69e-01 79.8% 83.1%
5nj5A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.58 40.0 3.49e-01 96.9% 47.5%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 28.0 3.82e-01 88.3% 95.9%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 28.0 3.26e-01 81.6% 64.0%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.56 27.0 3.10e-01 83.4% 57.8%
4qclA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 29.0 3.69e-01 76.1% 91.9%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 27.0 3.39e-01 85.3% 75.7%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 34.0 3.91e-01 82.2% 87.2%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 27.0 3.33e-01 81.6% 77.6%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 30.0 3.56e-01 85.9% 79.8%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 24.0 3.22e-01 80.4% 79.5%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 27.0 3.55e-01 77.3% 93.0%
4xiwC00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.51 38.0 3.33e-01 76.1% 63.6%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 34.0 3.65e-01 82.8% 78.6%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 22.0 3.09e-01 84.0% 85.1%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596304 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 35.0 4.83e-01 93.3% 100.0%
3218749 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.67 23.0 3.88e-01 79.8% 86.7%
4019543 2484.1.1.104 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 0.66 42.0 3.67e-01 89.0% 43.8%
5000965 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.65 36.0 4.69e-01 96.9% 96.7%
3491181 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.64 49.0 5.31e-01 92.0% 96.3%
5011932 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.62 37.0 4.42e-01 100.0% 90.5%
3178803 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.61 25.0 3.38e-01 78.5% 70.6%
5071146 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.61 36.0 4.37e-01 98.8% 92.0%
5075859 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.61 36.0 4.28e-01 100.0% 86.4%
4960250 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.61 35.0 4.23e-01 98.8% 89.0%
3499841 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 29.0 3.86e-01 92.6% 82.2%
5045089 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.60 35.0 4.29e-01 99.4% 93.0%
5008315 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.60 34.0 4.18e-01 98.2% 90.0%
3947692 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.59 41.0 4.40e-01 98.8% 82.1%
3274535 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 32.0 3.77e-01 82.8% 75.5%
3801626 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 32.0 3.84e-01 81.0% 77.3%
5013768 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.58 32.0 4.00e-01 96.3% 91.6%
3206632 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.58 25.0 3.50e-01 86.5% 80.0%
3481564 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 29.0 4.03e-01 90.8% 98.8%
3481504 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 40.0 4.57e-01 96.9% 98.3%
4964560 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.55 34.0 4.02e-01 100.0% 92.4%
3558201 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.55 33.0 3.65e-01 76.7% 73.8%
3588750 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 27.0 3.71e-01 94.5% 100.0%
3587662 330.18.1.0 ↗ a+b two layers › dsRBD-like › Anti-CRISPR protein AcrIIA6 › Anti-CRISPR protein AcrIIA6 0.54 25.0 3.27e-01 79.8% 76.7%
3337376 224.1.1.5 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › DUF7904 0.54 33.0 3.62e-01 80.4% 73.3%
3464998 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.53 33.0 3.56e-01 79.8% 73.3%
3173251 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.53 45.0 4.51e-01 98.8% 88.8%
4032717 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 25.0 3.60e-01 75.5% 100.0%
4942704 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.52 35.0 4.09e-01 86.5% 100.0%
4978172 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.52 26.0 3.30e-01 80.4% 78.9%
1397885 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.52 38.0 3.57e-01 88.3% 61.4%
5040123 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.52 31.0 3.72e-01 100.0% 93.0%
5047681 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 29.0 3.30e-01 85.3% 71.2%
3691964 206.1.1.82 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580 0.51 36.0 2.75e-01 71.2% 56.8%
4136826 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.51 36.0 3.83e-01 93.9% 83.3%
3667234 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.50 45.0 3.69e-01 97.5% 76.7%
D2 medium residues 213-282
PDB