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MF324911.1__ASR85240.1__SEA_SIRPHILIP_38__00037

Bact-Vir

MF324911.1__ASR85240.1__SEA_SIRPHILIP_38__00037

Identity

Accession:
MF324911 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anayavirus› Mycobacterium_phage_SirPhilip

TaxID: 2015824

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-85
PDB
Domain cluster: rep: MH509441.1__AXH46814.1__SEA_ACOLYTE_71__00070__D2-71
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.65 51.0 5.00e-01 96.4% 78.5%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.60 34.0 3.79e-01 71.4% 74.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 36.0 4.17e-01 88.1% 86.7%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.12e-01 90.5% 81.3%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 4.62e-01 91.7% 84.5%
2o3oA01 2.40.128.690 Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like 0.57 49.0 4.34e-01 94.0% 87.6%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.12e-01 91.7% 83.2%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 32.0 3.43e-01 81.0% 62.7%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.56 49.0 4.20e-01 100.0% 80.3%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 46.0 4.31e-01 92.9% 93.5%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.55 50.0 4.21e-01 100.0% 65.5%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 38.0 3.88e-01 72.6% 96.3%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.90e-01 96.4% 69.8%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.54 39.0 3.51e-01 76.2% 81.7%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.71e-01 73.8% 97.8%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 38.0 2.87e-01 77.4% 85.4%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.93e-01 90.5% 75.9%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 31.0 3.61e-01 81.0% 83.9%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 31.0 3.45e-01 84.5% 74.6%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.64e-01 91.7% 81.7%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.87e-01 91.7% 83.9%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.63e-01 91.7% 95.3%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.52 39.0 3.91e-01 89.3% 78.2%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.87e-01 94.0% 95.9%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.51 31.0 3.54e-01 83.3% 86.4%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 45.0 2.97e-01 96.4% 33.4%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 38.0 3.88e-01 86.9% 85.2%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3770801 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.69 61.0 5.91e-01 98.8% 91.6%
3508573 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 46.0 4.24e-01 72.6% 72.4%
3492348 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.64 49.0 4.01e-01 79.8% 58.6%
3504767 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.64 42.0 4.50e-01 71.4% 80.0%
4003463 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.62 45.0 4.00e-01 77.4% 73.6%
3621723 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.62 46.0 3.29e-01 78.6% 36.8%
3474148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 47.0 4.13e-01 79.8% 75.8%
3884512 5.1.5.182 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Lgl_C 0.60 52.0 3.30e-01 95.2% 33.3%
4438762 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 49.0 4.96e-01 91.7% 89.4%
3404941 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.59 49.0 3.95e-01 94.0% 54.7%
3953439 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 38.0 4.14e-01 82.1% 81.4%
3982704 2484.1.1.115 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66 0.58 39.0 3.38e-01 70.2% 64.3%
3722822 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 46.0 2.90e-01 85.7% 17.5%
3622641 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.58 48.0 4.34e-01 92.9% 74.2%
3774251 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.58 50.0 3.13e-01 96.4% 30.1%
3940546 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.57 47.0 4.25e-01 90.5% 74.8%
3472685 3324.1.1.2 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.57 49.0 3.48e-01 97.6% 41.5%
3393168 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 3.83e-01 78.6% 75.5%
3483566 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.28e-01 89.3% 72.4%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 3.48e-01 70.2% 59.1%
5052256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 50.0 4.79e-01 100.0% 90.5%
3573739 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.55 45.0 4.12e-01 90.5% 74.8%
3941717 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 45.0 4.48e-01 90.5% 87.5%
4105352 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.55 38.0 2.75e-01 73.8% 27.7%
3587515 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.55 45.0 4.01e-01 90.5% 74.2%
3514476 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.55 45.0 3.53e-01 95.2% 42.9%
4484730 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.54 41.0 3.98e-01 89.3% 71.0%
146272 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 40.0 4.09e-01 90.5% 83.1%
3958663 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.53 37.0 3.02e-01 73.8% 41.7%
3608215 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 42.0 3.49e-01 100.0% 47.7%
2754601 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 44.0 3.87e-01 96.4% 91.1%
3715739 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.52 44.0 2.86e-01 96.4% 50.2%
3958888 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 36.0 3.08e-01 72.6% 45.8%
3170251 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.52 46.0 3.93e-01 100.0% 72.9%
3244890 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 3.33e-01 96.4% 52.5%
3576412 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.52 43.0 3.00e-01 95.2% 54.9%
3704832 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.52 45.0 2.85e-01 96.4% 33.9%
152631 5.1.3.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.51 43.0 2.87e-01 94.0% 95.9%
3689179 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 3.00e-01 90.5% 37.8%
3230613 3755.3.1.410 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Nup88 0.51 43.0 2.68e-01 95.2% 25.1%
3452819 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.51 35.0 3.36e-01 71.4% 67.3%
3599752 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.84e-01 97.6% 29.7%
3594102 832.1.1.0 ↗ a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 0.51 35.0 3.05e-01 72.6% 90.0%
3372915 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.50 35.0 3.51e-01 72.6% 77.6%
3582298 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.70e-01 96.4% 32.6%