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MF356679.1__ASR76344.1__D6_41__00041
Bact-VirMF356679.1__ASR76344.1__D6_41__00041
Identity
- Accession:
- MF356679 ↗
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 135-218
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3abbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.62 | 56.0 | 3.62e-01 | 100.0% | 61.4% |
| 1gwiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 53.0 | 3.44e-01 | 100.0% | 60.9% |
| 6qumA04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.60 | 45.0 | 3.73e-01 | 79.8% | 65.1% |
| 7r0kB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 49.0 | 3.45e-01 | 89.3% | 92.9% |
| 1ow4A00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.59 | 42.0 | 3.73e-01 | 75.0% | 53.3% |
| 2xkrA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 51.0 | 3.29e-01 | 100.0% | 62.5% |
| 6pmiF01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 40.0 | 4.14e-01 | 76.2% | 86.3% |
| 3ejbH02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.56 | 49.0 | 3.53e-01 | 100.0% | 69.8% |
| 6ldiF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 4.22e-01 | 84.5% | 85.4% |
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 48.0 | 3.37e-01 | 98.8% | 53.6% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 39.0 | 3.98e-01 | 76.2% | 81.2% |
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 42.0 | 3.81e-01 | 85.7% | 90.4% |
| 1hbgA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 39.0 | 3.34e-01 | 79.8% | 98.0% |
| 5bn3A04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.52 | 44.0 | 3.82e-01 | 97.6% | 74.1% |
| 2wmoA01 | 1.25.40.410 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A | 0.52 | 43.0 | 3.78e-01 | 94.0% | 79.1% |
| 3kp9A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.52 | 37.0 | 3.01e-01 | 100.0% | 39.5% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 35.0 | 3.57e-01 | 72.6% | 75.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4931029 | 857.1.1.41 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › PF26485 | 0.68 | 51.0 | 5.10e-01 | 79.8% | 78.8% |
| 4961848 | 4120.1.1.98 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › PF26485 | 0.67 | 50.0 | 4.97e-01 | 79.8% | 74.4% |
| 5049235 | 857.1.1.41 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › PF26485 | 0.66 | 49.0 | 4.95e-01 | 79.8% | 78.8% |
| 4272325 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.61 | 42.0 | 3.21e-01 | 71.4% | 41.4% |
| 3877844 | 529.1.1.2 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP | 0.60 | 42.0 | 4.13e-01 | 76.2% | 67.8% |
| 3739292 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.60 | 41.0 | 4.28e-01 | 72.6% | 92.4% |
| 3067828 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.58 | 43.0 | 4.43e-01 | 77.4% | 89.7% |
| 4233279 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.58 | 41.0 | 3.01e-01 | 76.2% | 30.0% |
| 4669192 | 1128.1.1.7 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF27708 | 0.56 | 44.0 | 3.57e-01 | 85.7% | 72.0% |
| 140810 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.56 | 40.0 | 3.14e-01 | 75.0% | 36.9% |
| 4052667 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 46.0 | 3.02e-01 | 95.2% | 62.3% |
| 4274766 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.55 | 43.0 | 4.06e-01 | 85.7% | 86.7% |
| 3411115 | 109.4.1.14 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4 | 0.54 | 34.0 | 2.60e-01 | 73.8% | 25.2% |
| 3170157 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.54 | 39.0 | 3.63e-01 | 76.2% | 66.7% |
| 3940544 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 42.0 | 3.93e-01 | 86.9% | 73.3% |
| 2075049 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.53 | 36.0 | 3.61e-01 | 100.0% | 68.6% |
| 3718172 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 36.0 | 3.34e-01 | 72.6% | 99.1% |
| 5026959 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.52 | 36.0 | 3.91e-01 | 72.6% | 92.9% |
| 4472484 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.52 | 39.0 | 3.50e-01 | 82.1% | 60.8% |
| 3228000 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.52 | 36.0 | 3.74e-01 | 71.4% | 88.0% |
| 3736542 | 5001.1.1.85 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin | 0.51 | 44.0 | 3.15e-01 | 100.0% | 77.1% |
| 4966166 | 5038.2.1.12 ↗ | alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › TrbL_3 | 0.51 | 36.0 | 2.79e-01 | 75.0% | 64.0% |
| 4943368 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.51 | 35.0 | 3.29e-01 | 75.0% | 58.1% |
| None | — | 0.51 | 41.0 | 3.05e-01 | 88.1% | 40.5% | |
| 3414050 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.50 | 37.0 | 3.47e-01 | 78.6% | 78.1% |
D2
medium
residues 1-79
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fgxA00 | 3.30.2220.10 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 | 0.74 | 65.0 | 6.15e-01 | 100.0% | 85.4% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.56 | 39.0 | 3.23e-01 | 74.7% | 88.2% |
| 1m45A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 38.0 | 4.10e-01 | 89.9% | 94.0% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.50 | 43.0 | 3.31e-01 | 98.7% | 79.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 333304 | 6050.1.1.1 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_1 | 0.71 | 62.0 | 5.75e-01 | 100.0% | 85.6% |
| 3933372 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.50 | 41.0 | 3.14e-01 | 93.7% | 76.1% |
D3
medium
residues 80-134_219-273
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ld6A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 27.0 | 2.73e-01 | 88.2% | 46.2% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 29.0 | 3.31e-01 | 95.5% | 77.6% |
| 4l5rC02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 26.0 | 2.80e-01 | 82.7% | 56.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4254219 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 26.0 | 3.27e-01 | 80.9% | 83.1% |
| 3272197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 32.0 | 3.34e-01 | 93.6% | 67.6% |
| 3594413 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.50 | 28.0 | 3.28e-01 | 88.2% | 76.2% |