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MF356679.1__ASR76351.1__D6_51__00051

Bact-Vir

MF356679.1__ASR76351.1__D6_51__00051

Identity

Accession:
MF356679 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_D6

TaxID: 2014434

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-165
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.62 41.0 4.63e-01 90.7% 87.9%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 29.0 3.05e-01 87.6% 52.4%
3frqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 35.0 3.43e-01 91.3% 58.2%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.52 38.0 3.74e-01 84.5% 68.0%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 34.0 3.48e-01 84.5% 67.1%
3b9wA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.50 39.0 3.05e-01 82.6% 89.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3898611 611.12.1.1 ↗ alpha bundles › N-cbl like › Izumo sperm-egg fusion protein 1 N-terminal domain › Izumo sperm-egg fusion protein 1 N-terminal domain › IZUMO 0.65 43.0 4.72e-01 84.5% 82.3%
3880 611.5.1.1 ↗ alpha bundles › N-cbl like › Superantigen MAM N-terminal domain › Superantigen MAM N-terminal domain › MA-Mit 0.63 42.0 4.67e-01 90.7% 86.4%
5039989 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 40.0 3.98e-01 90.1% 69.7%
2142445 5049.1.1.1 ↗ alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Ammonium transporter › Ammonium_transp 0.53 41.0 3.14e-01 82.6% 88.6%
4991495 1188.1.1.0 ↗ alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter 0.51 37.0 3.25e-01 75.8% 82.4%
D2 high residues 200-299
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 51.0 3.20e-01 100.0% 13.9%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 45.0 4.72e-01 100.0% 79.8%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 53.0 4.82e-01 88.0% 97.7%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.64 47.0 4.29e-01 76.0% 83.1%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 57.0 4.58e-01 100.0% 50.5%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.64 43.0 4.54e-01 74.0% 77.5%
2y7qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 43.0 4.53e-01 99.0% 78.7%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 52.0 5.50e-01 99.0% 100.0%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.62 50.0 4.52e-01 88.0% 68.8%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 43.0 4.74e-01 93.0% 92.3%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 50.0 4.57e-01 89.0% 97.7%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.59 48.0 4.72e-01 88.0% 87.0%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 40.0 4.41e-01 96.0% 92.0%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 46.0 4.63e-01 83.0% 99.0%
7kbrC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 41.0 3.76e-01 95.0% 54.5%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 46.0 4.45e-01 85.0% 92.8%
4bsjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.37e-01 100.0% 84.4%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 3.72e-01 100.0% 65.9%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.35e-01 98.0% 84.4%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 4.04e-01 95.0% 91.4%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 4.17e-01 96.0% 84.5%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 39.0 4.28e-01 95.0% 92.4%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.92e-01 74.0% 95.2%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 44.0 4.38e-01 85.0% 100.0%
3u2aA00 3.30.450.310 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 39.0 3.84e-01 74.0% 86.6%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 50.0 4.32e-01 100.0% 85.3%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 3.89e-01 86.0% 95.9%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 42.0 4.27e-01 83.0% 100.0%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.55 37.0 4.27e-01 76.0% 100.0%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.68e-01 73.0% 81.0%
4iknA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.54 47.0 4.65e-01 97.0% 95.3%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.81e-01 100.0% 52.8%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.36e-01 100.0% 86.3%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.39e-01 100.0% 98.5%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 3.04e-01 86.0% 72.8%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.21e-01 100.0% 71.8%
3fg8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.71e-01 74.0% 89.6%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 4.30e-01 97.0% 89.2%
2zoeB02 2.60.120.1080 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.03e-01 99.0% 73.7%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.43e-01 74.0% 65.9%
3abzA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 3.90e-01 99.0% 100.0%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 45.0 3.80e-01 100.0% 91.0%
3hunA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 38.0 2.79e-01 78.0% 99.3%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.40e-01 100.0% 62.5%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 46.0 3.95e-01 100.0% 81.5%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 42.0 4.08e-01 95.0% 78.3%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 45.0 3.86e-01 100.0% 88.0%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 45.0 4.09e-01 100.0% 78.4%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.66e-01 85.0% 66.7%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.42e-01 79.0% 66.7%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 36.0 3.20e-01 74.0% 55.9%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.70e-01 85.0% 73.1%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 29.0 3.43e-01 77.0% 94.7%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.50 39.0 3.18e-01 86.0% 92.7%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.50 44.0 3.32e-01 100.0% 45.9%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390411 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.67 50.0 3.86e-01 100.0% 35.1%
3270919 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.65 53.0 5.07e-01 88.0% 80.9%
3510358 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.64 47.0 4.23e-01 77.0% 83.6%
3797565 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.64 45.0 3.56e-01 100.0% 33.6%
3230646 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.64 46.0 4.39e-01 76.0% 80.0%
3970706 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.64 51.0 4.70e-01 86.0% 84.6%
3399913 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.64 46.0 4.00e-01 76.0% 66.9%
3584940 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.63 49.0 3.79e-01 100.0% 37.3%
3887495 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 49.0 4.70e-01 83.0% 75.7%
3509038 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 50.0 5.01e-01 85.0% 89.0%
3477921 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 55.0 4.80e-01 100.0% 84.5%
5071831 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 50.0 5.28e-01 87.0% 100.0%
3192718 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.62 45.0 4.19e-01 100.0% 59.7%
3237828 331.9.1.9 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.62 50.0 4.85e-01 88.0% 79.1%
3265682 10.32.1.255 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF28714 0.62 47.0 3.84e-01 100.0% 42.1%
3281166 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.61 44.0 4.22e-01 100.0% 65.2%
3618151 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.61 44.0 3.92e-01 97.0% 52.4%
6331 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 50.0 4.54e-01 89.0% 97.0%
3624850 331.9.1.9 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.61 48.0 4.80e-01 88.0% 81.9%
4598668 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 48.0 5.13e-01 84.0% 100.0%
3877348 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.60 44.0 3.99e-01 98.0% 55.8%
5016456 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.60 46.0 4.98e-01 84.0% 97.6%
3572172 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.60 44.0 3.94e-01 98.0% 55.4%
3215840 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 45.0 3.33e-01 85.0% 30.8%
4928031 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 34.0 3.42e-01 77.0% 54.9%
3966741 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 46.0 3.19e-01 85.0% 29.7%
3281094 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 47.0 4.08e-01 86.0% 64.7%
3389647 331.18.1.5 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › PTHB1_pf 0.58 46.0 4.34e-01 86.0% 68.8%
3926438 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.57 46.0 3.45e-01 86.0% 49.2%
3281093 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 45.0 3.96e-01 86.0% 68.7%
4135753 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 44.0 3.13e-01 87.0% 29.5%
1558582 5092.1.1.6 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Fiber_head_BAdV-4 0.56 44.0 4.23e-01 100.0% 73.9%
4958962 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.56 40.0 3.65e-01 73.0% 81.5%
3638304 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 40.0 3.73e-01 74.0% 84.0%
5039180 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 41.0 3.15e-01 77.0% 48.3%
4980716 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 39.0 4.00e-01 74.0% 87.0%
3914972 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 48.0 4.01e-01 100.0% 78.4%
4646733 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.55 43.0 4.39e-01 95.0% 85.0%
3809656 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.55 41.0 4.26e-01 85.0% 86.7%
3963338 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 42.0 2.89e-01 84.0% 25.9%
2554619 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 42.0 2.94e-01 84.0% 28.0%
3937833 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 37.0 2.86e-01 75.0% 31.5%
3215905 331.15.1.4 ↗ a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › FTH 0.54 43.0 3.55e-01 85.0% 47.2%
3593291 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.39e-01 73.0% 60.7%
3472961 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.40e-01 75.0% 57.3%
3489061 223.1.1.71 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 0.54 39.0 3.37e-01 76.0% 70.3%
3263284 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.53 48.0 3.65e-01 100.0% 48.5%
3239005 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 39.0 2.60e-01 77.0% 20.0%
3623902 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.53 38.0 3.25e-01 74.0% 55.0%
3971224 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 37.0 2.93e-01 73.0% 46.2%
4984069 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.53 48.0 4.27e-01 100.0% 82.9%
135448 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.53 47.0 4.21e-01 100.0% 81.1%
4980683 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 38.0 2.81e-01 74.0% 38.5%
3279701 319.1.1.16 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 0.52 39.0 4.30e-01 84.0% 98.8%
3551723 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.52 38.0 3.22e-01 75.0% 58.1%
3932304 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.23e-01 75.0% 58.1%
4345682 223.1.1.97 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_2 0.52 38.0 3.12e-01 77.0% 69.5%
5056388 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 46.0 4.24e-01 100.0% 86.5%
3226303 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.52 37.0 3.14e-01 75.0% 52.9%
3482586 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.66e-01 81.0% 85.6%
4946526 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 45.0 3.35e-01 100.0% 46.4%
3887913 223.2.1.40 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN 0.51 37.0 3.21e-01 75.0% 56.1%
4948100 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 45.0 3.31e-01 100.0% 47.5%
3628522 5.1.4.489 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Prenyltrans 0.50 40.0 2.37e-01 85.0% 11.1%
3234328 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 38.0 3.80e-01 85.0% 77.1%
5013243 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.50 39.0 4.05e-01 83.0% 100.0%
4259372 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 38.0 2.87e-01 81.0% 39.2%
4941547 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.50 35.0 3.55e-01 73.0% 98.0%
4961450 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.50 44.0 4.04e-01 100.0% 80.0%
3262980 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.50 36.0 3.03e-01 75.0% 61.7%
3531090 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.50 35.0 2.93e-01 73.0% 50.3%
3641525 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.50 36.0 2.94e-01 75.0% 56.0%
D3 high residues 375-498_533-558
PDB
Domain cluster: rep: term2_saliva_scaffold_1_prodigal-single.1__X__X__00145__D418-545_582-601
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pk8A00 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.78 49.0 6.10e-01 84.0% 100.0%
6xgpB01 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.70 60.0 6.29e-01 91.3% 100.0%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.69 54.0 5.95e-01 100.0% 100.0%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.67 58.0 6.05e-01 92.7% 99.3%
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 29.0 3.13e-01 89.3% 54.7%
4xhzA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.55 36.0 4.23e-01 96.7% 94.3%
1knyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 29.0 3.14e-01 90.7% 57.6%
4aurA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 3.39e-01 82.7% 89.3%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 31.0 3.24e-01 74.7% 64.9%
3oulA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 42.0 3.72e-01 90.0% 91.9%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.50 38.0 3.50e-01 78.7% 84.3%
3oqbH02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 44.0 3.80e-01 95.3% 87.3%
3df7A01 3.40.50.11770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 29.0 3.36e-01 95.3% 81.6%
2qy6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 43.0 3.74e-01 93.3% 67.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583655 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.79 70.0 5.29e-01 92.7% 54.7%
4995674 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.78 72.0 5.90e-01 97.3% 66.3%
3933174 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.63 26.0 3.74e-01 95.3% 88.3%
3944238 2485.3.1.7 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.60 53.0 4.21e-01 92.7% 55.1%
4815223 2485.3.1.7 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.59 51.0 4.56e-01 92.0% 72.9%
4973362 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.57 45.0 3.46e-01 98.0% 36.5%
3240027 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 41.0 3.50e-01 94.0% 45.5%
4610422 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.55 44.0 3.46e-01 98.7% 38.5%
3517704 2007.2.3.24 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PF27561 0.52 41.0 3.01e-01 82.7% 92.1%
5010082 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.52 38.0 3.73e-01 77.3% 78.2%
5065122 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.52 37.0 3.38e-01 72.7% 71.3%
3178257 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.51 36.0 3.39e-01 72.7% 85.4%
D4 medium residues 318-374
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.65 29.0 3.19e-01 93.0% 48.9%
6dvhB01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 48.0 2.94e-01 80.7% 78.1%
2o6kA00 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.63 41.0 3.78e-01 71.9% 52.8%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 46.0 3.68e-01 86.0% 47.6%
1dxrL02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.59 46.0 3.83e-01 89.5% 68.5%
6gcdA00 3.30.920.90 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.55 45.0 3.20e-01 86.0% 98.1%
3khyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 41.0 3.03e-01 93.0% 79.9%
2c42A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.52 46.0 2.99e-01 100.0% 95.7%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 38.0 2.99e-01 80.7% 97.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016327 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.78 49.0 4.52e-01 75.4% 51.4%
3280929 101.1.1.125 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF3263 0.77 44.0 3.92e-01 75.4% 41.2%
5056127 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.73 50.0 2.90e-01 71.9% 49.2%
5000872 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.68 50.0 3.80e-01 77.2% 35.2%
3081263 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.63 48.0 4.67e-01 89.5% 74.6%
3729444 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.62 45.0 2.92e-01 78.9% 37.1%
4481706 103.1.1.7 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_2 0.60 44.0 3.78e-01 78.9% 74.4%
3190354 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.55 42.0 3.14e-01 86.0% 32.0%
3937075 101.1.1.62 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.55 28.0 2.91e-01 75.4% 49.1%
1005 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.53 33.0 2.95e-01 70.2% 38.9%