←Back to structures

MF356679.1__ASR76407.1__D6_98__00098

Bact-Vir

MF356679.1__ASR76407.1__D6_98__00098

Identity

Accession:
MF356679 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_D6

TaxID: 2014434

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: rep: OR339795.1__WNL49430.1__X__00081__D2-52
D2 high residues 58-162
PDB
Domain cluster: rep: OR339795.1__WNL49430.1__X__00081__D62-154
D3 high residues 248-324
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06147.19 best DUF968 68.0 1.50e-18 100.0% 46.2%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.69 50.0 4.15e-01 77.9% 56.3%
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.66 45.0 4.47e-01 70.1% 81.2%
2y43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 36.0 3.46e-01 74.0% 48.9%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 36.0 3.76e-01 75.3% 63.4%
1kb2B00 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.60 44.0 4.27e-01 76.6% 78.8%
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 36.0 3.60e-01 77.9% 58.7%
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 35.0 3.52e-01 77.9% 63.2%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 33.0 3.33e-01 76.6% 60.5%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.52 37.0 3.65e-01 74.0% 91.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978374 378.1.1.18 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF968 0.88 82.0 7.91e-01 100.0% 95.3%
4949181 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 58.0 5.89e-01 79.2% 93.3%
4959094 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 43.0 4.97e-01 75.3% 90.9%
3952818 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.68 57.0 5.79e-01 96.1% 95.9%
5082962 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 61.0 5.37e-01 100.0% 96.4%
2991844 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.66 55.0 4.97e-01 93.5% 86.2%
4187705 377.1.3.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › zf-FPG_IleRS 0.63 37.0 4.42e-01 77.9% 91.8%
3809673 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.60 35.0 3.50e-01 74.0% 53.8%
3264295 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 36.0 3.81e-01 77.9% 65.7%
3225862 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.60 36.0 3.59e-01 72.7% 56.2%
3249325 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.59 35.0 3.20e-01 72.7% 41.9%
3624588 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.58 35.0 3.55e-01 74.0% 58.7%
3591477 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 33.0 3.22e-01 76.6% 47.8%
3469045 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.57 43.0 4.38e-01 83.1% 84.0%
3249904 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.57 34.0 3.45e-01 76.6% 57.5%
3597386 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 33.0 3.02e-01 72.7% 41.0%
None — 0.56 34.0 3.32e-01 75.3% 52.9%
3595905 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 35.0 2.98e-01 76.6% 36.3%
3718581 386.1.1.114 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C3HC4_2 0.55 35.0 3.16e-01 76.6% 44.5%
2322754 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.53 41.0 4.21e-01 89.6% 86.5%
3259236 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 33.0 3.12e-01 76.6% 49.0%
3966363 377.5.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › YggX-like (Pfam 04362) › YggX-like (Pfam 04362) 0.53 37.0 3.76e-01 74.0% 98.7%
4162480 377.5.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › YggX-like (Pfam 04362) › YggX-like (Pfam 04362) › Iron_traffic 0.53 37.0 3.74e-01 74.0% 98.7%
3905886 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 33.0 3.22e-01 76.6% 56.7%