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MF360958.1__ASV44019.1__PBI_SCTP2_4__00004

Bact-Vir

MF360958.1__ASV44019.1__PBI_SCTP2_4__00004

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

48.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 627-781
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14890.12 best Intein_splicing 38.1 1.90e-09 98.1% 100.0%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.92 77.0 8.07e-01 100.0% 94.3%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.91 74.0 7.89e-01 98.7% 93.5%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.89 77.0 8.06e-01 98.1% 96.5%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 74.0 7.68e-01 100.0% 95.9%
1zdeA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 76.0 7.51e-01 100.0% 90.6%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.82 69.0 7.25e-01 100.0% 95.7%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.81 71.0 7.31e-01 98.1% 96.6%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 75.0 7.04e-01 98.7% 96.8%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 76.0 7.18e-01 98.7% 96.6%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 75.0 7.22e-01 98.7% 96.4%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 74.0 7.20e-01 98.7% 96.4%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 75.0 7.28e-01 100.0% 94.1%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 73.0 7.04e-01 98.7% 96.5%
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 25.0 3.71e-01 80.6% 92.3%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.54 23.0 3.08e-01 76.8% 72.9%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4457379 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.93 77.0 7.96e-01 100.0% 90.3%
4993732 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.92 68.0 7.60e-01 100.0% 93.6%
259963 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.91 74.0 7.89e-01 98.7% 93.5%
3952464 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.91 75.0 7.83e-01 100.0% 91.0%
3602706 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.91 74.0 7.84e-01 98.7% 93.5%
4982797 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.91 79.0 8.16e-01 100.0% 95.2%
4667152 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.91 83.0 8.25e-01 100.0% 92.4%
4565870 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.91 82.0 8.21e-01 100.0% 92.9%
2445477 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.91 77.0 7.72e-01 100.0% 87.7%
4872043 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 79.0 8.05e-01 100.0% 94.0%
4940451 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 72.0 7.72e-01 97.4% 95.6%
4997597 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 78.0 7.94e-01 98.7% 93.3%
5030847 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 80.0 7.92e-01 99.4% 90.0%
5032319 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 79.0 8.07e-01 98.7% 95.3%
2553113 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 66.0 7.29e-01 98.7% 93.0%
3963364 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.88 76.0 7.93e-01 100.0% 95.2%
5002632 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 77.0 7.88e-01 98.1% 94.0%
5030213 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 74.0 7.55e-01 100.0% 90.7%
4993871 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 63.0 7.28e-01 75.5% 99.1%
3257888 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 78.0 7.97e-01 99.4% 96.0%
3603738 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 73.0 7.72e-01 97.4% 96.4%
3603108 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 73.0 7.61e-01 100.0% 94.5%
4586920 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 78.0 7.88e-01 98.1% 94.8%
4945569 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 77.0 7.73e-01 100.0% 93.5%
4999902 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 74.0 7.64e-01 100.0% 96.6%
4070999 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.84 75.0 7.51e-01 100.0% 91.6%
3604113 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 73.0 7.54e-01 99.4% 95.9%
4983458 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 80.0 7.81e-01 98.1% 95.2%
4992473 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 80.0 7.67e-01 100.0% 89.4%
5031634 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 77.0 7.64e-01 100.0% 92.5%
4315406 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 80.0 7.50e-01 98.7% 96.7%
4993128 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 79.0 7.83e-01 100.0% 95.0%
5012957 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 80.0 7.64e-01 100.0% 96.0%
2524072 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 79.0 7.59e-01 98.7% 95.3%
4975578 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 78.0 6.21e-01 99.4% 54.9%
4930433 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 75.0 7.59e-01 99.4% 94.8%
2636473 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 69.0 7.16e-01 100.0% 93.1%
4977673 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 78.0 6.68e-01 98.7% 96.9%
4983616 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 78.0 7.52e-01 100.0% 96.5%
4993853 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 77.0 7.54e-01 98.7% 96.4%
3949584 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 72.0 7.36e-01 97.4% 95.3%
5029540 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 76.0 7.58e-01 98.1% 95.6%
4971400 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 76.0 5.93e-01 100.0% 51.5%
4940943 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 78.0 7.49e-01 100.0% 95.3%
3495262 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.80 77.0 7.28e-01 100.0% 93.9%
5029355 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 72.0 7.31e-01 98.7% 96.7%
5014854 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 76.0 6.68e-01 100.0% 95.8%
4948019 69.1.1.17 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › MCM 0.80 76.0 7.27e-01 100.0% 94.9%
5031914 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.80 76.0 7.09e-01 100.0% 93.5%
5065032 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 76.0 7.44e-01 99.4% 97.0%
4600944 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 74.0 7.10e-01 100.0% 86.3%
3230518 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 73.0 7.31e-01 100.0% 95.5%
4487998 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 74.0 7.10e-01 100.0% 86.3%
5022295 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 77.0 7.51e-01 100.0% 95.8%
5035476 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 74.0 7.39e-01 98.7% 94.4%
4054994 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 76.0 7.32e-01 100.0% 94.1%
3518586 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 74.0 6.65e-01 100.0% 74.6%
5012699 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 74.0 7.15e-01 98.1% 96.5%
4993581 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 75.0 7.23e-01 100.0% 94.1%
4243055 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.78 73.0 6.63e-01 100.0% 77.4%
4971412 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 72.0 6.82e-01 96.8% 97.2%
4170121 69.1.1.11 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.78 75.0 7.21e-01 100.0% 95.9%
5035795 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 66.0 6.80e-01 99.4% 93.8%
4993480 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 74.0 7.37e-01 100.0% 96.2%
4978473 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 73.0 7.06e-01 99.4% 98.2%
3877825 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.76 73.0 6.47e-01 100.0% 76.2%
4274856 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 72.0 7.04e-01 98.1% 95.2%
3602222 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 70.0 6.10e-01 97.4% 97.3%
4996401 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 69.0 6.85e-01 100.0% 95.6%
5026284 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.51 27.0 3.34e-01 96.1% 81.1%
3619496 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 36.0 2.75e-01 81.3% 30.5%
D2 medium residues 13-84
PDB
D3 medium residues 402-477
PDB