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MF360958.1__ASV44125.1__PBI_SCTP2_110__00110

Bact-Vir

MF360958.1__ASV44125.1__PBI_SCTP2_110__00110

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-118
PDB
Domain cluster: rep: hypothetical_protein_EhV353__YP_294111__Emiliania_huxleyi_virus_86__181082__D8-106
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00383.30 best dCMP_cyt_deam_1 47.5 1.90e-12 100.0% 72.5%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.82 64.0 5.39e-01 100.0% 52.6%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.80 66.0 5.83e-01 100.0% 62.4%
1g8mA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.73 58.0 5.13e-01 98.1% 59.2%
2hvwA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.72 63.0 5.47e-01 100.0% 63.9%
2w4lB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.70 61.0 5.17e-01 100.0% 59.2%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.69 42.0 3.97e-01 94.2% 51.2%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 43.0 4.45e-01 94.2% 68.4%
1vq2A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.67 64.0 5.21e-01 100.0% 64.2%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 44.0 4.59e-01 94.2% 75.3%
3ifrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 57.0 4.36e-01 96.1% 54.2%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 51.0 4.77e-01 98.1% 68.3%
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.65 53.0 4.36e-01 96.1% 50.6%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 34.0 4.23e-01 73.8% 85.5%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 40.0 4.18e-01 94.2% 69.5%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 39.0 4.10e-01 94.2% 68.8%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 39.0 3.96e-01 95.1% 64.7%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 39.0 3.99e-01 94.2% 65.7%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.59 46.0 3.55e-01 94.2% 38.3%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 4.19e-01 95.1% 70.3%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 37.0 3.79e-01 98.1% 63.7%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 4.11e-01 94.2% 72.1%
4zzfA02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 4.11e-01 97.1% 77.1%
2yocA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.99e-01 97.1% 73.1%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.55 43.0 3.87e-01 94.2% 60.7%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.94e-01 99.0% 78.9%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 40.0 3.65e-01 92.2% 60.3%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.87e-01 99.0% 80.8%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.94e-01 94.2% 85.4%
5gkxA00 3.90.1640.20 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › TON_0340 0.51 43.0 3.27e-01 95.1% 81.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4093837 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.81 65.0 5.93e-01 100.0% 66.2%
11432 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.80 66.0 5.83e-01 100.0% 62.4%
4018051 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.79 65.0 5.82e-01 100.0% 63.6%
3962828 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.79 60.0 5.16e-01 100.0% 54.0%
5030015 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.75 71.0 5.89e-01 100.0% 66.5%
5042416 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.75 72.0 5.90e-01 100.0% 65.9%
4947404 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.75 72.0 5.97e-01 100.0% 68.3%
5040139 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.73 44.0 5.21e-01 93.2% 88.6%
3245221 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.71 63.0 5.46e-01 100.0% 64.8%
5078371 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 44.0 4.46e-01 94.2% 67.0%
3988163 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.68 60.0 5.32e-01 100.0% 68.1%
3756125 11.1.1.127 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL6Ra-bind 0.67 44.0 4.39e-01 95.1% 64.8%
5001646 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 44.0 3.95e-01 93.2% 50.7%
4363048 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.65 51.0 4.73e-01 99.0% 66.9%
5010853 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 48.0 4.59e-01 95.1% 67.5%
4435677 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.64 52.0 4.76e-01 97.1% 66.9%
2647850 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.64 40.0 4.27e-01 93.2% 71.4%
4311623 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.63 51.0 4.67e-01 97.1% 65.9%
4280109 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.63 51.0 4.78e-01 97.1% 71.2%
4270283 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.63 51.0 4.67e-01 97.1% 66.9%
5041319 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 39.0 4.16e-01 98.1% 71.1%
5039338 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.63 39.0 3.72e-01 94.2% 53.4%
3242650 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 42.0 3.35e-01 94.2% 33.0%
5065315 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 42.0 4.09e-01 94.2% 61.7%
3629564 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 48.0 4.29e-01 92.2% 82.1%
3401112 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.57 28.0 3.63e-01 97.1% 83.3%
3596679 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 47.0 4.16e-01 92.2% 77.4%
3496319 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 38.0 3.79e-01 94.2% 68.6%
1117679 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.55 42.0 3.78e-01 93.2% 57.6%
4956425 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 36.0 3.83e-01 95.1% 74.4%
3607434 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 48.0 4.37e-01 94.2% 79.3%
3618645 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 46.0 4.04e-01 92.2% 85.3%
None — 0.54 44.0 2.69e-01 92.2% 59.1%
4959786 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.48e-01 95.1% 50.3%
3432441 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 42.0 3.14e-01 100.0% 34.1%