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MF360958.1__ASV44147.1__PBI_SCTP2_132__00132

Bact-Vir

MF360958.1__ASV44147.1__PBI_SCTP2_132__00132

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

72.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-108
PDB
Domain cluster: rep: Salt_Pond_R1_B_D2_MG_scaffold_4_prodigal-single.1__X__X__00241__D21-94
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bvfA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.63 45.0 3.76e-01 74.1% 48.9%
1e0yA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 44.0 4.01e-01 74.1% 67.6%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 44.0 3.96e-01 77.6% 60.5%
3fw8A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 43.0 3.24e-01 77.6% 35.5%
1zr6A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 43.0 3.65e-01 77.6% 51.8%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 44.0 3.87e-01 81.2% 57.7%
4pytA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 46.0 4.00e-01 84.7% 59.4%
1w1oA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 43.0 3.75e-01 77.6% 55.1%
1hskA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 44.0 3.92e-01 84.7% 61.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.40e-01 71.8% 95.5%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.56 40.0 2.90e-01 74.1% 79.4%
5tipA01 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.56 42.0 3.33e-01 81.2% 67.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.83e-01 70.6% 81.4%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.55 39.0 3.39e-01 74.1% 78.6%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 37.0 3.48e-01 70.6% 86.5%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.53 40.0 2.69e-01 81.2% 87.6%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.51 36.0 3.27e-01 72.9% 82.9%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.63e-01 71.8% 92.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4158834 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.63 44.0 3.37e-01 72.9% 32.8%
3693712 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.63 45.0 3.30e-01 74.1% 32.1%
3269510 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.62 43.0 3.28e-01 72.9% 35.1%
4111708 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.62 43.0 3.27e-01 72.9% 33.2%
4216870 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.61 45.0 3.42e-01 77.6% 34.9%
3943953 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.61 36.0 2.59e-01 70.6% 18.8%
3959696 217.1.1.0 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain 0.61 43.0 3.53e-01 74.1% 43.9%
3279557 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.61 42.0 3.22e-01 72.9% 35.0%
4666687 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.61 44.0 3.32e-01 77.6% 31.9%
4231368 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.60 44.0 3.41e-01 77.6% 35.8%
4484119 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.60 44.0 3.41e-01 77.6% 37.5%
4945559 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.60 44.0 3.52e-01 77.6% 42.4%
1173366 217.1.1.0 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain 0.59 44.0 3.96e-01 77.6% 60.5%
2319481 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.59 43.0 3.24e-01 77.6% 33.8%
3954625 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.59 43.0 3.37e-01 77.6% 40.0%
1933293 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 3.80e-01 70.6% 76.8%
2389747 10.2.1.33 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif 0.58 44.0 3.32e-01 82.4% 58.3%
3690950 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.58 44.0 3.97e-01 81.2% 64.3%
4107126 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.57 44.0 3.32e-01 81.2% 35.5%
3959849 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 34.0 2.79e-01 95.3% 31.2%
2497010 10.2.1.54 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.55 43.0 3.25e-01 87.1% 69.5%
None — 0.55 46.0 2.80e-01 94.1% 38.0%
4021292 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 46.0 2.86e-01 89.4% 94.2%
4928418 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 38.0 3.68e-01 71.8% 93.5%
3501346 10.32.1.221 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25900 0.53 38.0 3.15e-01 76.5% 88.7%
2179 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.53 40.0 2.69e-01 81.2% 87.3%
3937833 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.08e-01 87.1% 59.5%
4936907 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.19e-01 70.6% 80.0%
4978505 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 35.0 2.62e-01 72.9% 51.6%
None — 0.50 41.0 3.10e-01 96.5% 52.2%
4954389 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 37.0 3.17e-01 81.2% 72.7%