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MF360958.1__ASV44153.1__PBI_SCTP2_138__00138

Bact-Vir

MF360958.1__ASV44153.1__PBI_SCTP2_138__00138

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

65.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-68
PDB
Domain cluster: rep: SRR1747055_scaffold_2_prodigal-single.1__X__X__00259__D1-52
D2 medium residues 69-159
PDB
Domain cluster: rep: MG450654.1__ATW62800.1__SCBWM1_gp116__00117__D11-96
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 46.0 3.70e-01 81.3% 62.3%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 43.0 3.62e-01 83.5% 64.9%
4evqA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 42.0 3.49e-01 81.3% 79.1%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.99e-01 89.0% 38.6%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.93e-01 89.0% 44.1%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 40.0 3.37e-01 81.3% 55.8%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 41.0 2.86e-01 87.9% 47.1%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.77e-01 86.8% 35.9%
5a0tB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 38.0 2.78e-01 83.5% 44.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989853 77.1.1.13 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.76 41.0 2.77e-01 89.0% 15.6%
3620101 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.68 31.0 3.50e-01 75.8% 55.7%
4512216 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 31.0 4.05e-01 73.6% 94.0%
3989854 3761.1.1.4 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR 0.57 43.0 4.48e-01 79.1% 90.6%
4201251 2006.1.1.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.56 43.0 3.06e-01 82.4% 33.8%
4946362 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 37.0 2.94e-01 70.3% 57.4%
3780567 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 42.0 3.00e-01 89.0% 38.4%
3696553 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.53 34.0 2.84e-01 80.2% 35.3%
4419934 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.53 40.0 2.98e-01 79.1% 71.9%
3595178 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 42.0 2.52e-01 87.9% 16.8%
3708710 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 41.0 2.44e-01 86.8% 15.8%
3973416 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.77e-01 85.7% 41.1%
3736958 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.86e-01 90.1% 36.6%
3994699 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.81e-01 89.0% 37.9%
D3 medium residues 182-366
PDB