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MF360958.1__ASV44177.1__PBI_SCTP2_162__00162

Bact-Vir

MF360958.1__ASV44177.1__PBI_SCTP2_162__00162

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-63
PDB
Domain cluster: rep: NC_041878.1__YP_009594767.1__FDG95_gp227__00227__D74-112
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tm0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.71 61.0 4.39e-01 100.0% 45.2%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.70 62.0 4.28e-01 100.0% 77.2%
3hutA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.70 60.0 4.26e-01 98.0% 85.3%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.69 59.0 4.32e-01 100.0% 65.3%
2r0cA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.69 52.0 3.77e-01 83.7% 64.5%
4nqrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 57.0 4.07e-01 98.0% 84.5%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.68 57.0 4.27e-01 100.0% 74.3%
5c5cA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 59.0 4.10e-01 100.0% 76.8%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 4.80e-01 100.0% 95.5%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.65 47.0 4.40e-01 79.6% 95.3%
1xezA01 3.30.110.130 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain 0.65 47.0 4.08e-01 81.6% 92.6%
4q6bA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 56.0 4.10e-01 100.0% 84.3%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 53.0 3.30e-01 98.0% 29.8%
3hj6A02 3.40.1620.20 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.63 46.0 4.45e-01 81.6% 89.7%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 53.0 4.35e-01 100.0% 51.5%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 52.0 4.16e-01 98.0% 48.1%
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 42.0 2.55e-01 71.4% 93.5%
3otxB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 50.0 3.20e-01 98.0% 41.2%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 3.12e-01 73.5% 90.2%
3iq0A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 51.0 3.17e-01 98.0% 35.2%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 51.0 4.09e-01 98.0% 48.5%
3tqtB01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 43.0 3.40e-01 89.8% 59.7%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 46.0 3.59e-01 100.0% 72.6%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.55 38.0 2.81e-01 71.4% 55.9%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.54 39.0 3.33e-01 100.0% 45.9%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 44.0 3.36e-01 100.0% 86.4%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.80e-01 100.0% 48.4%
4gdxB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.53 42.0 3.02e-01 98.0% 91.0%
1y56B02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 39.0 2.93e-01 85.7% 68.2%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.68e-01 98.0% 44.3%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 32.0 2.83e-01 85.7% 38.0%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.73e-01 100.0% 50.6%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 44.0 2.99e-01 100.0% 88.2%
5yxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.07e-01 85.7% 68.2%
3eoeD01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.51 42.0 3.21e-01 100.0% 43.8%
4zo2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 44.0 2.74e-01 100.0% 40.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989853 77.1.1.13 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.85 74.0 4.39e-01 93.9% 34.6%
4962756 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.73 65.0 4.61e-01 100.0% 80.7%
3412045 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.73 64.0 4.32e-01 100.0% 71.9%
3411165 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.72 52.0 4.90e-01 77.6% 63.3%
3278244 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.71 61.0 4.18e-01 100.0% 45.9%
3280061 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.71 60.0 4.20e-01 100.0% 47.4%
4631652 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.70 59.0 3.83e-01 98.0% 61.4%
3596173 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 54.0 3.17e-01 85.7% 37.9%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.70 59.0 4.45e-01 100.0% 77.7%
5038175 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.68 54.0 4.68e-01 89.8% 65.0%
5081065 3761.1.1.5 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › PF26696 0.68 50.0 5.22e-01 79.6% 91.1%
None — 0.68 57.0 3.88e-01 100.0% 62.1%
3502259 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.67 53.0 4.04e-01 91.8% 50.4%
3280170 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.67 52.0 4.05e-01 87.8% 60.9%
3405816 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.66 45.0 4.37e-01 71.4% 67.3%
4117456 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.66 57.0 4.11e-01 100.0% 80.7%
3380390 4.1.1.282 ↗ beta barrels › SH3 › SH3 › SH3 › GUB_WAK_bind 0.66 44.0 4.01e-01 100.0% 52.3%
3238508 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 46.0 4.14e-01 75.5% 87.1%
5067314 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.65 55.0 3.69e-01 98.0% 73.0%
3386570 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.64 53.0 4.03e-01 100.0% 66.4%
3946430 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.63 46.0 3.31e-01 81.6% 65.8%
3400492 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 52.0 3.78e-01 100.0% 76.1%
4116302 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 47.0 3.46e-01 85.7% 73.6%
4011441 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.61 47.0 2.79e-01 87.8% 43.6%
3832254 59.1.1.17 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › PF30943 0.61 37.0 2.91e-01 87.8% 27.1%
3946323 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.60 45.0 3.30e-01 85.7% 72.7%
3971995 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.60 47.0 2.80e-01 93.9% 43.3%
3969550 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.59 49.0 2.90e-01 98.0% 53.8%
3695728 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 48.0 2.82e-01 93.9% 45.3%
3978570 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.58 47.0 2.81e-01 98.0% 53.2%
None — 0.57 45.0 2.73e-01 93.9% 47.5%
4007931 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.57 45.0 2.69e-01 93.9% 46.1%
3970176 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.57 45.0 2.73e-01 93.9% 48.1%
4244612 2003.1.5.38 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SAM_MT 0.57 47.0 3.01e-01 95.9% 23.5%
3493642 59.1.1.6 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIIC_sub6 0.57 39.0 3.03e-01 73.5% 71.8%
3971289 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.56 45.0 2.67e-01 93.9% 45.9%
144711 2003.1.10.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.56 43.0 3.29e-01 89.8% 53.0%
3338562 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.56 39.0 2.71e-01 75.5% 34.6%
None — 0.56 46.0 2.74e-01 98.0% 53.6%
3964676 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.55 38.0 2.89e-01 75.5% 71.1%
3279669 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.55 44.0 2.63e-01 93.9% 44.8%
4930190 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 40.0 2.97e-01 81.6% 62.8%
3281773 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.55 44.0 2.59e-01 95.9% 32.3%
5003298 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 43.0 2.52e-01 100.0% 13.3%
5030017 2007.1.7.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.53 42.0 3.08e-01 100.0% 78.2%
D2 high residues 68-160
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.82 77.0 7.45e-01 100.0% 93.2%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.81 69.0 7.13e-01 100.0% 94.4%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.78 70.0 7.05e-01 100.0% 97.8%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.75 66.0 6.70e-01 100.0% 96.7%
2zw9B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 48.0 3.29e-01 78.5% 69.9%
2nncA00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.60 40.0 3.86e-01 93.5% 58.2%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.59 48.0 4.62e-01 97.8% 77.7%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 51.0 3.57e-01 100.0% 70.8%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 4.41e-01 92.5% 78.6%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 46.0 4.39e-01 97.8% 77.5%
4a6dA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 3.52e-01 94.6% 64.1%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 47.0 3.72e-01 93.5% 78.1%
1u2zA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 46.0 3.73e-01 97.8% 77.2%
1kzqA01 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.52 40.0 3.65e-01 83.9% 96.1%
1j5xA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 37.0 3.17e-01 75.3% 58.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184462 520.1.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 0.82 77.0 6.20e-01 100.0% 57.1%
4075828 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.60 50.0 3.93e-01 94.6% 59.5%
4510460 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 47.0 4.50e-01 97.8% 75.7%
5044383 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.57 47.0 3.82e-01 91.4% 87.0%
2706546 10.32.1.16 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Clenterotox 0.57 46.0 4.20e-01 92.5% 68.7%
3507371 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 45.0 4.25e-01 93.5% 75.8%
4929387 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.54 38.0 4.26e-01 100.0% 100.0%
4075999 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.53 38.0 2.83e-01 77.4% 35.4%
3289663 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.52 44.0 3.45e-01 95.7% 58.9%
1820 3156.3.1.1 ↗ beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › SAG 0.52 40.0 3.65e-01 83.9% 96.1%
3421120 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 42.0 3.33e-01 100.0% 41.5%
3576524 311.1.1.2 ↗ a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto 0.51 39.0 3.19e-01 81.7% 62.4%