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MF360958.1__ASV44197.1__PBI_SCTP2_182__00182

Bact-Vir

MF360958.1__ASV44197.1__PBI_SCTP2_182__00182

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-105
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.71 41.0 4.94e-01 73.5% 86.6%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.64 38.0 4.06e-01 73.5% 66.3%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.64 41.0 4.25e-01 73.5% 68.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 36.0 4.10e-01 71.6% 77.0%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.62 35.0 3.39e-01 72.5% 49.1%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 39.0 3.54e-01 83.3% 50.0%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.59 41.0 3.37e-01 72.5% 84.7%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.58 30.0 3.33e-01 70.6% 61.0%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.58 29.0 3.16e-01 71.6% 54.5%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.57 44.0 3.62e-01 81.4% 83.3%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.57 37.0 4.06e-01 74.5% 79.8%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.56 32.0 3.28e-01 74.5% 56.3%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.56 36.0 3.92e-01 78.4% 78.8%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.55 39.0 3.73e-01 72.5% 64.0%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 32.0 3.40e-01 74.5% 64.5%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 39.0 3.45e-01 99.0% 53.2%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 46.0 4.41e-01 97.1% 94.9%
7zdtD01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.53 44.0 3.22e-01 95.1% 100.0%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 29.0 3.21e-01 80.4% 65.8%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.53 37.0 3.69e-01 72.5% 73.8%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 37.0 3.95e-01 74.5% 87.0%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.52 36.0 3.68e-01 72.5% 74.8%
4akgA04 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.52 37.0 3.21e-01 85.3% 48.1%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.52 37.0 3.42e-01 73.5% 75.2%
4mycA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.51 42.0 3.03e-01 93.1% 97.3%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 32.0 3.17e-01 74.5% 57.3%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 36.0 3.52e-01 74.5% 72.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989722 632.24.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain 0.68 41.0 5.02e-01 90.2% 95.4%
3629701 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 37.0 3.98e-01 74.5% 65.9%
3924801 109.4.1.1643 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 0.64 35.0 3.70e-01 71.6% 58.9%
4028201 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 45.0 4.42e-01 94.1% 68.2%
4259729 3755.3.1.295 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 0.63 32.0 2.91e-01 74.5% 35.6%
3884683 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 33.0 3.11e-01 73.5% 45.0%
3788338 604.12.1.9 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.61 34.0 3.88e-01 72.5% 74.3%
3889971 109.4.1.1643 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 0.60 33.0 3.27e-01 74.5% 50.9%
3311177 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.58 37.0 4.42e-01 85.3% 95.7%
3740646 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.57 35.0 3.92e-01 89.2% 77.5%
3243299 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 32.0 3.73e-01 70.6% 80.0%
5070891 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 32.0 3.59e-01 72.5% 73.8%
3763261 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 39.0 2.95e-01 72.5% 81.8%
4045132 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.54 38.0 3.75e-01 72.5% 70.0%
3184140 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.54 36.0 3.47e-01 71.6% 60.0%
3606983 1189.1.1.2 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B 0.54 47.0 3.26e-01 96.1% 93.5%
5069235 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 38.0 3.09e-01 72.5% 88.9%
3925326 601.11.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain 0.53 43.0 3.67e-01 96.1% 52.9%
4119921 1128.1.1.23 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Ycf66_N 0.53 39.0 4.00e-01 95.1% 84.0%
3785572 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.53 40.0 4.05e-01 94.1% 82.0%
3657504 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 37.0 3.38e-01 72.5% 55.6%
4321938 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.52 37.0 3.10e-01 72.5% 77.6%
5075806 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.52 30.0 3.34e-01 75.5% 71.2%
5013034 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.52 36.0 3.82e-01 70.6% 88.9%
3739377 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.51 41.0 2.97e-01 87.3% 72.9%
3440913 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.51 43.0 4.00e-01 96.1% 83.7%
3225714 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.50 41.0 3.57e-01 87.3% 77.4%