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MF360958.1__ASV44282.1__PBI_SCTP2_267__00267

Bact-Vir

MF360958.1__ASV44282.1__PBI_SCTP2_267__00267

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-114
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
D2 high residues 117-204
PDB
Domain cluster: rep: OQ436456.1__WEU67474.1__X__00207__D57-148
D3 high residues 245-296
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 80.0 5.43e-01 100.0% 38.6%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 79.0 5.41e-01 100.0% 39.1%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 77.0 5.52e-01 100.0% 44.1%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 74.0 5.12e-01 100.0% 36.7%
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.83 73.0 5.33e-01 100.0% 39.7%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.82 72.0 5.23e-01 100.0% 45.1%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 69.0 5.07e-01 100.0% 36.9%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 69.0 5.06e-01 100.0% 38.4%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.76 51.0 4.20e-01 88.5% 39.1%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.71 62.0 4.82e-01 100.0% 78.6%
2ff4A03 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.68 54.0 4.46e-01 90.4% 93.9%
3gqsB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.67 52.0 4.30e-01 88.5% 96.0%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.65 46.0 3.74e-01 88.5% 39.8%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.63 54.0 4.23e-01 100.0% 81.4%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.63 53.0 4.06e-01 100.0% 81.5%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 49.0 4.06e-01 96.2% 49.4%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.62 52.0 3.99e-01 100.0% 98.5%
2lc1A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 52.0 4.29e-01 100.0% 92.0%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.61 42.0 4.45e-01 100.0% 84.8%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.60 52.0 4.93e-01 100.0% 85.9%
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.59 41.0 3.59e-01 100.0% 47.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.12e-01 100.0% 66.7%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 49.0 4.71e-01 100.0% 87.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.10e-01 100.0% 68.2%
2qhlD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.66e-01 100.0% 56.0%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 43.0 3.81e-01 100.0% 93.1%
1g4fA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 42.0 3.71e-01 96.2% 64.0%
3oq3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.28e-01 86.5% 90.3%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.51e-01 100.0% 53.6%
2zgiD02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.52 38.0 2.99e-01 90.4% 78.1%
1p9kA00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.51 39.0 3.62e-01 94.2% 73.4%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 45.0 3.82e-01 100.0% 60.5%
7sjlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.25e-01 84.6% 94.6%
2ofqA01 2.60.40.2500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.47e-01 98.1% 96.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4984220 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.92 84.0 5.82e-01 100.0% 38.7%
3934143 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.90 82.0 5.85e-01 100.0% 45.0%
3215378 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.89 80.0 5.66e-01 100.0% 48.0%
4997601 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 79.0 5.69e-01 100.0% 41.4%
4932851 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.87 78.0 5.71e-01 100.0% 40.7%
4992473 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 78.0 5.34e-01 100.0% 41.2%
4930925 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 78.0 5.62e-01 100.0% 42.1%
4993871 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 77.0 5.92e-01 100.0% 55.7%
4971400 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 77.0 4.73e-01 100.0% 20.0%
4998394 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 78.0 5.43e-01 100.0% 50.3%
4994372 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 77.0 5.79e-01 100.0% 43.3%
4127166 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.86 76.0 5.40e-01 100.0% 48.0%
5030847 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 76.0 5.30e-01 100.0% 38.7%
3603738 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 75.0 5.48e-01 100.0% 43.6%
4416649 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 76.0 5.45e-01 100.0% 47.6%
5078549 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 76.0 5.31e-01 100.0% 36.9%
5023539 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 76.0 5.34e-01 100.0% 36.1%
4933756 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 75.0 5.45e-01 100.0% 45.7%
4948019 69.1.1.17 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › MCM 0.85 75.0 5.15e-01 100.0% 41.1%
4945569 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 75.0 5.27e-01 100.0% 43.2%
4997597 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 75.0 5.32e-01 100.0% 39.3%
4152516 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 75.0 5.49e-01 100.0% 41.5%
4993808 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 75.0 5.38e-01 100.0% 40.7%
5014854 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 75.0 4.89e-01 100.0% 49.3%
5013937 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 74.0 5.15e-01 100.0% 40.0%
4979631 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 75.0 5.34e-01 100.0% 35.3%
2445477 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 73.0 5.23e-01 100.0% 37.7%
4940943 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 73.0 5.09e-01 100.0% 39.4%
5028312 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 75.0 5.39e-01 100.0% 38.6%
3282306 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 74.0 5.43e-01 100.0% 40.0%
5030499 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 74.0 5.26e-01 100.0% 45.3%
5065032 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 74.0 5.16e-01 100.0% 42.4%
2553113 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 73.0 5.48e-01 100.0% 42.2%
4457379 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 73.0 5.29e-01 100.0% 37.9%
4993813 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 74.0 5.18e-01 100.0% 37.5%
3963364 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.83 73.0 5.26e-01 100.0% 39.3%
5029540 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 73.0 5.11e-01 100.0% 35.0%
4586920 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 72.0 5.11e-01 100.0% 43.9%
4940699 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 72.0 5.12e-01 100.0% 41.3%
3952464 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.82 72.0 5.22e-01 100.0% 37.9%
4941327 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 72.0 5.21e-01 100.0% 53.1%
4315406 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 71.0 4.86e-01 100.0% 52.2%
5002632 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 71.0 5.11e-01 100.0% 39.6%
4291841 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 70.0 4.95e-01 100.0% 32.1%
2636473 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 69.0 5.03e-01 100.0% 35.9%
2701967 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 69.0 5.12e-01 100.0% 42.3%
259963 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.79 69.0 5.06e-01 100.0% 38.4%
5046393 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 70.0 4.97e-01 100.0% 38.0%
3994238 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 68.0 5.53e-01 100.0% 91.0%
4322985 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.75 58.0 3.47e-01 84.6% 17.2%
3597410 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 65.0 5.00e-01 100.0% 93.0%
3936038 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.73 63.0 4.98e-01 100.0% 84.1%
2323756 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.71 59.0 4.32e-01 100.0% 49.4%
3593275 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 60.0 4.78e-01 100.0% 85.5%
3278436 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.68 50.0 4.08e-01 80.8% 86.0%
4120420 295.1.1.15 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.67 49.0 3.86e-01 100.0% 36.5%
4039738 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.67 58.0 5.07e-01 100.0% 80.0%
3555174 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.63 53.0 4.35e-01 100.0% 91.4%
145200 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.61 52.0 4.29e-01 100.0% 92.0%
3962217 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.60 49.0 4.23e-01 94.2% 90.6%
5055336 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.57 44.0 3.78e-01 88.5% 85.6%
4957582 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 46.0 3.10e-01 100.0% 34.2%