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MF360958.1__ASV44293.1__PBI_SCTP2_278__00278

Bact-Vir

MF360958.1__ASV44293.1__PBI_SCTP2_278__00278

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-92
PDB
Domain cluster: rep: NC_048077.1__YP_009813735.1__HOU32_gp290__00290__D8-67
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w97L01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.61 51.0 4.06e-01 93.2% 84.4%
4fgmA01 2.60.40.3650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 47.0 3.65e-01 86.5% 76.2%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 52.0 3.99e-01 100.0% 64.4%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.59 49.0 4.27e-01 93.2% 62.7%
2ljuA01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.59 44.0 4.43e-01 81.1% 100.0%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.56 35.0 2.56e-01 74.3% 20.9%
1h7sA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 42.0 3.28e-01 87.8% 77.7%
1fuiA02 3.40.275.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fucose Isomerase; Chain A, domain 2 › L-fucose Isomerase; Chain A, domain 2 0.55 35.0 2.77e-01 95.9% 27.9%
3qwxX01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 40.0 3.54e-01 81.1% 71.4%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.53 34.0 3.28e-01 73.0% 55.8%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 36.0 3.24e-01 71.6% 98.1%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.43e-01 74.3% 64.5%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.51 36.0 3.16e-01 74.3% 49.1%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 35.0 2.97e-01 70.3% 43.1%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.78e-01 73.0% 33.1%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.51 36.0 3.12e-01 75.7% 95.9%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 39.0 2.90e-01 87.8% 69.7%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.50 34.0 2.82e-01 70.3% 55.6%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.16e-01 79.7% 95.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018419 2484.1.1.139 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.68 61.0 4.28e-01 100.0% 59.6%
3611221 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.66 48.0 4.30e-01 78.4% 55.2%
5049205 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.65 54.0 4.60e-01 91.9% 56.9%
3489971 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 47.0 3.97e-01 75.7% 52.5%
4313828 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 54.0 3.74e-01 98.6% 92.8%
3164015 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 52.0 4.44e-01 97.3% 71.2%
146982 3203.1.1.1 ↗ a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase › NDUS4 0.60 47.0 4.24e-01 86.5% 76.0%
4344687 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.59 40.0 3.56e-01 74.3% 48.6%
5035688 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.59 49.0 4.02e-01 91.9% 87.9%
3165271 207.2.1.60 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta-sol_PIC_HAP1_IgA0_2nd 0.59 47.0 2.88e-01 87.8% 21.4%
4951143 295.1.1.53 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 0.59 39.0 4.41e-01 71.6% 92.7%
5042216 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 48.0 4.21e-01 93.2% 84.3%
3614586 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.58 39.0 3.42e-01 73.0% 44.1%
4976604 2484.1.1.139 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.57 47.0 3.83e-01 94.6% 78.6%
4023152 5.1.5.115 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR3_2nd 0.57 38.0 2.50e-01 70.3% 22.0%
3980760 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 45.0 3.60e-01 95.9% 98.8%
3255470 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.87e-01 82.4% 89.5%
4111598 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.55 38.0 3.86e-01 81.1% 74.7%
3264859 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.37e-01 74.3% 96.2%
3712308 109.1.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_6 0.53 42.0 2.94e-01 89.2% 51.2%
3974178 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.52 35.0 2.88e-01 71.6% 95.2%
3380753 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 36.0 3.37e-01 73.0% 58.9%
4017266 101.1.8.10 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.52 41.0 3.08e-01 87.8% 46.2%
3612698 213.1.1.14 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_16 0.52 35.0 2.57e-01 71.6% 61.0%
4504922 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.51 37.0 3.76e-01 83.8% 76.0%
4956437 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 39.0 3.25e-01 90.5% 45.9%
3240161 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 42.0 3.19e-01 100.0% 79.1%
3401290 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 35.0 3.04e-01 73.0% 50.8%
4807965 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.50 36.0 3.38e-01 77.0% 76.5%
3821170 319.1.1.15 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 0.50 35.0 3.10e-01 73.0% 50.9%
3624550 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.50 39.0 3.21e-01 87.8% 96.7%