←Back to structures
MF360958.1__ASV44333.1__PBI_SCTP2_318__00318
Bact-VirMF360958.1__ASV44333.1__PBI_SCTP2_318__00318
Identity
- Accession:
- MF360958 ↗
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-48
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.68 | 51.0 | 4.31e-01 | 83.0% | 84.1% |
| 1hskA03 | 3.90.78.10 | Alpha Beta › Alpha-Beta Complex › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 › UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain | 0.68 | 52.0 | 4.28e-01 | 85.1% | 81.8% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 49.0 | 3.94e-01 | 87.2% | 90.9% |
| 1t94B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.61 | 48.0 | 3.60e-01 | 87.2% | 95.0% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.61 | 51.0 | 4.93e-01 | 95.7% | 100.0% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.60 | 44.0 | 3.55e-01 | 80.9% | 89.6% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.59 | 44.0 | 2.97e-01 | 80.9% | 95.3% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.56 | 45.0 | 4.50e-01 | 100.0% | 100.0% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.56 | 43.0 | 4.35e-01 | 100.0% | 94.0% |
| 3zrpA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 43.0 | 3.35e-01 | 91.5% | 89.1% |
| 3v67A01 | 3.30.450.210 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain | 0.55 | 40.0 | 3.06e-01 | 76.6% | 76.9% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.55 | 46.0 | 4.00e-01 | 100.0% | 71.8% |
| 2bvfA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.55 | 38.0 | 2.84e-01 | 74.5% | 43.3% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 40.0 | 3.19e-01 | 89.4% | 91.0% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 3.35e-01 | 85.1% | 72.0% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 43.0 | 3.09e-01 | 93.6% | 78.4% |
| 2x4lA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 41.0 | 3.12e-01 | 97.9% | 100.0% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 36.0 | 2.65e-01 | 83.0% | 43.1% |
| 3pbkA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.51 | 43.0 | 3.36e-01 | 97.9% | 65.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.51 | 39.0 | 3.61e-01 | 100.0% | 65.2% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.50 | 33.0 | 2.81e-01 | 70.2% | 98.9% |
| 3c6mC01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.50 | 38.0 | 3.89e-01 | 100.0% | 93.2% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 39.0 | 3.26e-01 | 100.0% | 45.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4054122 | 313.1.1.1 ↗ | a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C | 0.69 | 53.0 | 3.85e-01 | 85.1% | 70.4% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.66 | 50.0 | 5.12e-01 | 100.0% | 91.1% |
| 3789312 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.66 | 52.0 | 3.76e-01 | 87.2% | 71.9% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.66 | 55.0 | 5.32e-01 | 100.0% | 96.4% |
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.65 | 54.0 | 4.49e-01 | 100.0% | 52.2% |
| 3596818 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 51.0 | 4.55e-01 | 100.0% | 84.0% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.63 | 50.0 | 4.52e-01 | 100.0% | 64.0% |
| 2321315 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.62 | 49.0 | 3.96e-01 | 91.5% | 76.8% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 51.0 | 5.09e-01 | 100.0% | 94.0% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 49.0 | 4.86e-01 | 100.0% | 88.0% |
| 3486011 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 49.0 | 4.22e-01 | 100.0% | 74.1% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 48.0 | 4.63e-01 | 100.0% | 82.8% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 48.0 | 4.38e-01 | 100.0% | 74.3% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 48.0 | 3.91e-01 | 100.0% | 48.6% |
| 3756162 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.59 | 51.0 | 3.77e-01 | 100.0% | 78.5% |
| 4530959 | 230.3.1.0 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain | 0.59 | 46.0 | 3.49e-01 | 87.2% | 91.3% |
| 3303270 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 47.0 | 4.10e-01 | 100.0% | 88.7% |
| 3588301 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.56 | 39.0 | 2.46e-01 | 72.3% | 37.6% |
| 5079402 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 39.0 | 2.90e-01 | 74.5% | 86.2% |
| 4161761 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 44.0 | 3.58e-01 | 100.0% | 93.6% |
| 5068907 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 43.0 | 4.40e-01 | 97.9% | 93.3% |
| 5082483 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.54 | 43.0 | 2.98e-01 | 97.9% | 84.1% |
| 5009755 | 4176.1.1.2 ↗ | a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N | 0.54 | 41.0 | 2.78e-01 | 100.0% | 20.0% |
| 4433673 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.53 | 39.0 | 3.15e-01 | 85.1% | 85.4% |
| 3616325 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.51 | 42.0 | 2.98e-01 | 97.9% | 100.0% |
| 3991455 | 822.2.1.1 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK | 0.51 | 37.0 | 3.54e-01 | 95.7% | 67.3% |
| 4943506 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 39.0 | 4.13e-01 | 89.4% | 100.0% |