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MF360958.1__ASV44381.1__PBI_SCTP2_366__00366
Bact-VirMF360958.1__ASV44381.1__PBI_SCTP2_366__00366
Identity
- Accession:
- MF360958 ↗
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 262-319
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.67 | 51.0 | 3.53e-01 | 82.8% | 79.4% |
| 2lvsA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 46.0 | 4.88e-01 | 74.1% | 93.9% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.64 | 53.0 | 4.20e-01 | 96.6% | 84.0% |
| 1f0lA02 | 1.10.490.40 | Mainly Alpha › Orthogonal Bundle › Globin-like › Diphtheria toxin, translocation domain | 0.56 | 46.0 | 3.42e-01 | 100.0% | 71.8% |
| 3hnrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 45.0 | 3.26e-01 | 96.6% | 74.1% |
| 3aptA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.55 | 46.0 | 2.99e-01 | 100.0% | 37.7% |
| 5mdtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 46.0 | 3.49e-01 | 100.0% | 84.9% |
| 3onqA01 | 1.20.5.5100 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 36.0 | 4.04e-01 | 87.9% | 100.0% |
| 3cm0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.96e-01 | 94.8% | 38.0% |
| 3bvoB01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.51 | 36.0 | 3.18e-01 | 79.3% | 75.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042123 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 52.0 | 4.71e-01 | 74.1% | 53.3% |
| 3977374 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 51.0 | 5.22e-01 | 87.9% | 96.4% |
| 3290336 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.59 | 44.0 | 2.73e-01 | 81.0% | 78.3% |
| 4950777 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.59 | 44.0 | 4.21e-01 | 82.8% | 87.1% |
| 3671293 | 509.1.1.12 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PF25972 | 0.57 | 41.0 | 3.90e-01 | 77.6% | 81.4% |
| 4226245 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.56 | 47.0 | 4.52e-01 | 96.6% | 90.0% |
| 3295135 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.54 | 41.0 | 3.25e-01 | 84.5% | 80.0% |
D2
medium
residues 3-131
Domain cluster:
rep: BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00169__D1-120
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.71 | 49.0 | 5.73e-01 | 71.3% | 100.0% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.52 | 36.0 | 3.73e-01 | 100.0% | 76.7% |