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MF360958.1__ASV44536.1__PBI_SCTP2_521__00521
Bact-VirMF360958.1__ASV44536.1__PBI_SCTP2_521__00521
Identity
- Accession:
- MF360958 ↗
- Kingdom:
- phage
Quality
96.5
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-64
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2of3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.71 | 62.0 | 4.14e-01 | 100.0% | 41.7% |
| 1hzfA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.61 | 51.0 | 3.40e-01 | 100.0% | 50.3% |
| 3dcfA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 42.0 | 3.35e-01 | 75.0% | 65.5% |
| 3rotA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 48.0 | 3.91e-01 | 93.8% | 53.3% |
| 3as5A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 49.0 | 3.72e-01 | 100.0% | 47.2% |
| 5z6bA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 47.0 | 3.37e-01 | 98.4% | 81.1% |
| 1v9mA03 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.51 | 34.0 | 3.07e-01 | 71.9% | 47.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001218 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 60.0 | 4.61e-01 | 100.0% | 65.2% |
| 4426593 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.61 | 50.0 | 3.67e-01 | 90.6% | 75.3% |
| 4971986 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.59 | 41.0 | 3.53e-01 | 75.0% | 73.6% |
| 4235797 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.58 | 47.0 | 3.47e-01 | 90.6% | 73.1% |
D2
medium
residues 65-124
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.70 | 55.0 | 5.48e-01 | 86.7% | 93.4% |
| 2ra1A01 | 1.20.58.790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 53.0 | 4.56e-01 | 86.7% | 91.8% |
| 5h28A01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.67 | 55.0 | 4.26e-01 | 95.0% | 61.4% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.66 | 49.0 | 3.96e-01 | 81.7% | 59.5% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 46.0 | 3.85e-01 | 75.0% | 100.0% |
| 1qf9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 47.0 | 3.31e-01 | 85.0% | 40.2% |
| 7qpgW01 | 1.10.357.150 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.60 | 43.0 | 3.12e-01 | 78.3% | 53.7% |
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.60 | 47.0 | 4.84e-01 | 86.7% | 100.0% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.85e-01 | 83.3% | 94.7% |
| 1zakA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 2.99e-01 | 93.3% | 33.6% |
| 4c23B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 38.0 | 2.66e-01 | 81.7% | 69.2% |
| 7kseA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 41.0 | 3.23e-01 | 95.0% | 65.8% |
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.51 | 41.0 | 2.86e-01 | 93.3% | 75.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981336 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.63 | 51.0 | 4.82e-01 | 93.3% | 80.0% |
| 4008909 | 101.32.1.0 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin | 0.62 | 42.0 | 4.56e-01 | 71.7% | 94.0% |
| 3784565 | 101.46.1.0 ↗ | alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain | 0.60 | 41.0 | 3.39e-01 | 73.3% | 64.3% |
| 3279737 | 564.1.1.4 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › RskA_N | 0.59 | 40.0 | 4.03e-01 | 71.7% | 80.0% |
| 3334149 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 39.0 | 4.06e-01 | 73.3% | 90.9% |
| 3719604 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 4.17e-01 | 83.3% | 96.9% |
| 3167568 | 101.46.1.0 ↗ | alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain | 0.52 | 38.0 | 3.10e-01 | 80.0% | 62.5% |
| 5032110 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.17e-01 | 80.0% | 58.2% |
| 3580501 | 101.46.1.1 ↗ | alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N | 0.50 | 34.0 | 2.82e-01 | 70.0% | 42.7% |