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MF360958.1__ASV44547.1__PBI_SCTP2_532__00532

Bact-Vir

MF360958.1__ASV44547.1__PBI_SCTP2_532__00532

Identity

Accession:
MF360958 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salicola_phage_SCTP-2

TaxID: 2015814

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-70
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.67 57.0 4.45e-01 98.1% 69.7%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.65 44.0 4.18e-01 98.1% 58.7%
2nwuB01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.64 51.0 3.97e-01 92.3% 83.3%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.64 49.0 4.35e-01 90.4% 95.2%
5eo9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 3.77e-01 88.5% 68.2%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.58 47.0 4.08e-01 100.0% 90.4%
3m1cA04 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.57 50.0 3.75e-01 100.0% 40.9%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 50.0 3.90e-01 98.1% 66.4%
1jceA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 50.0 3.58e-01 100.0% 35.3%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.51e-01 98.1% 76.9%
6x4tA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 49.0 3.80e-01 100.0% 63.5%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 49.0 3.84e-01 100.0% 82.7%
1fbnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 34.0 3.43e-01 100.0% 62.7%
4i0kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 3.79e-01 100.0% 64.8%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.53e-01 98.1% 85.7%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.53 46.0 3.32e-01 100.0% 34.4%
3onhA01 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.53 42.0 3.18e-01 94.2% 39.6%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 39.0 2.75e-01 86.5% 65.8%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.52 39.0 3.46e-01 100.0% 55.1%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.52 42.0 3.77e-01 92.3% 64.5%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 3.82e-01 100.0% 65.9%
3c9aA01 2.20.20.160 Mainly Beta › Single Sheet › Anthopleurin-A › 0.51 44.0 3.89e-01 100.0% 67.1%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.50 41.0 3.49e-01 98.1% 55.2%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 40.0 3.66e-01 100.0% 88.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385644 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.65 58.0 4.28e-01 100.0% 55.2%
8264 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.65 44.0 4.18e-01 98.1% 58.7%
5058275 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.64 55.0 4.14e-01 100.0% 70.4%
3576888 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 55.0 4.13e-01 100.0% 76.9%
3715519 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 57.0 3.66e-01 98.1% 33.2%
5067736 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 52.0 4.50e-01 100.0% 60.0%
3224665 382.1.1.20 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 0.62 52.0 4.38e-01 100.0% 85.3%
3714622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 55.0 4.12e-01 98.1% 55.8%
4575105 882.1.1.0 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 0.61 51.0 3.78e-01 100.0% 85.3%
4382604 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 54.0 4.21e-01 100.0% 78.1%
3709246 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 47.0 4.42e-01 88.5% 96.9%
2444049 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 47.0 3.71e-01 88.5% 93.6%
4008034 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.58 51.0 3.48e-01 96.2% 42.4%
3924673 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 50.0 4.12e-01 98.1% 56.8%
3983134 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.58 50.0 4.02e-01 96.2% 72.0%
5032625 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 3.79e-01 100.0% 48.4%
3216375 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 50.0 4.27e-01 100.0% 94.1%
3491836 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.57 48.0 4.43e-01 100.0% 95.7%
3932150 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 45.0 4.14e-01 96.2% 80.0%
3275023 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.56 50.0 3.66e-01 100.0% 50.7%
3211703 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 48.0 4.25e-01 100.0% 97.5%
3893868 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 3.83e-01 98.1% 63.8%
3964974 223.3.1.6 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13 0.55 47.0 3.42e-01 98.1% 68.7%
3585855 382.1.1.3 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.55 44.0 3.85e-01 100.0% 96.8%
3922249 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 3.72e-01 100.0% 57.4%
3600713 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.55 48.0 3.48e-01 100.0% 46.9%
3405716 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 48.0 3.44e-01 100.0% 40.0%
4928514 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.66e-01 88.5% 100.0%
3395444 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 48.0 3.52e-01 100.0% 44.3%
3471454 10.21.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 0.54 47.0 3.43e-01 98.1% 51.4%
3849943 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.54 41.0 3.13e-01 90.4% 57.9%
3404192 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.54 44.0 3.39e-01 100.0% 63.6%
3697682 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.31e-01 100.0% 51.2%
3743702 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 45.0 3.61e-01 98.1% 74.3%
3993281 221.1.1.55 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL 0.52 38.0 3.17e-01 90.4% 96.7%
4007500 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.51 43.0 2.83e-01 100.0% 53.8%
3406258 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 43.0 3.69e-01 100.0% 61.1%
3475306 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 43.0 3.45e-01 100.0% 50.0%
3966576 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.50 41.0 2.74e-01 100.0% 55.8%
D2 high residues 76-155
PDB
Domain cluster: rep: KF301602.1__AGS80939.1__X__00054__D3-84