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MF370225.1__ASR76711.1__X__00048
Bact-VirMF370225.1__ASR76711.1__X__00048
Identity
- Accession:
- MF370225 ↗
- Kingdom:
- phage
Quality
79.9
mean pLDDT
Taxonomy
TaxID: 2023990
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-75
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01343.24 best | Peptidase_S49 | 59.5 | 5.60e-16 | 98.6% | 42.2% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rstA02 | 6.20.330.10 | Special › Other non-globular › peptide peptidase (sppa) fold › | 0.91 | 73.0 | 7.46e-01 | 84.3% | 88.1% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 45.0 | 3.98e-01 | 72.9% | 95.4% |
| 2rrdA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.55 | 48.0 | 4.26e-01 | 97.1% | 78.2% |
| 3py8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 37.0 | 2.98e-01 | 70.0% | 79.2% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.54 | 45.0 | 3.37e-01 | 94.3% | 51.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4963775 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.95 | 91.0 | 5.85e-01 | 100.0% | 26.8% |
| 4935462 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.92 | 86.0 | 5.69e-01 | 100.0% | 29.4% |
| 3385872 | 2486.1.1.14 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 | 0.91 | 86.0 | 5.55e-01 | 100.0% | 26.7% |
| 3979334 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.91 | 85.0 | 5.68e-01 | 100.0% | 29.6% |
| 5043495 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.91 | 85.0 | 5.49e-01 | 100.0% | 26.3% |
| 5005177 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.91 | 85.0 | 5.51e-01 | 100.0% | 26.7% |
| 4356494 | 2486.1.1.14 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 | 0.91 | 85.0 | 5.45e-01 | 100.0% | 25.7% |
| 5012787 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.91 | 84.0 | 5.58e-01 | 100.0% | 28.8% |
| 3839857 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.90 | 84.0 | 5.52e-01 | 100.0% | 27.7% |
| 4131089 | 2486.1.1.14 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 | 0.90 | 84.0 | 5.61e-01 | 100.0% | 30.0% |
| 4522150 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.90 | 84.0 | 5.37e-01 | 100.0% | 24.4% |
| 5029157 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.90 | 85.0 | 5.52e-01 | 100.0% | 26.4% |
| 3602940 | 2486.1.1.14 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 | 0.89 | 83.0 | 5.56e-01 | 100.0% | 30.6% |
| 5042774 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.89 | 82.0 | 5.44e-01 | 100.0% | 28.2% |
| 5042373 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.89 | 82.0 | 5.46e-01 | 100.0% | 29.4% |
| 3965266 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.89 | 84.0 | 5.35e-01 | 100.0% | 26.0% |
| 4936159 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.88 | 82.0 | 5.44e-01 | 100.0% | 28.8% |
| 5066620 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.87 | 81.0 | 5.53e-01 | 100.0% | 32.9% |
| 1122940 | 2486.1.1.14 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 | 0.87 | 80.0 | 5.47e-01 | 100.0% | 31.7% |
| 3959324 | 327.13.1.17 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › Peptidase_S49 | 0.87 | 79.0 | 6.61e-01 | 100.0% | 62.6% |
| 3953161 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.86 | 79.0 | 4.60e-01 | 100.0% | 13.8% |
| 3950506 | 2486.1.1.14 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 | 0.86 | 78.0 | 4.59e-01 | 100.0% | 13.8% |
| 5026361 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.86 | 78.0 | 5.42e-01 | 100.0% | 33.5% |
| 4932322 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.85 | 80.0 | 5.20e-01 | 100.0% | 27.2% |
| 3449223 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.85 | 77.0 | 4.51e-01 | 100.0% | 13.2% |
| 3273502 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.85 | 79.0 | 4.55e-01 | 100.0% | 13.3% |
| 4257590 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.85 | 79.0 | 5.12e-01 | 100.0% | 26.7% |
| 4940652 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.84 | 77.0 | 4.95e-01 | 100.0% | 25.5% |
| 4259068 | 2486.1.1.14 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 | 0.82 | 74.0 | 4.27e-01 | 100.0% | 12.7% |
| 3887938 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.68 | 52.0 | 3.82e-01 | 78.6% | 90.3% |
| 3278996 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 48.0 | 4.26e-01 | 77.1% | 82.0% |
| 3919737 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.62 | 57.0 | 4.43e-01 | 100.0% | 60.7% |
| 5026168 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.56 | 43.0 | 3.29e-01 | 81.4% | 94.8% |
D2
medium
residues 124-230
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.82 | 45.0 | 4.08e-01 | 89.7% | 42.6% |
| 1r8iA00 | 1.20.58.430 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Type IV secretion system, VirB5-domain | 0.71 | 56.0 | 4.53e-01 | 81.3% | 98.9% |
| 1hm7B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 36.0 | 2.56e-01 | 72.0% | 41.3% |