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MF374379.1__ATN94250.1__DN1_34__00033
Bact-VirMF374379.1__ATN94250.1__DN1_34__00033
Identity
- Accession:
- MF374379 ↗
- Kingdom:
- phage
Quality
95.9
mean pLDDT
Taxonomy
TaxID: 2024003
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-36_171-301
Domain cluster:
rep: SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00156__D2-36_161-339
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01933.24 best | CofD | 91.4 | 8.70e-26 | 80.9% | 39.0% |
CATH (77)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o2zA00 | 3.40.50.10680 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains | 0.88 | 83.0 | 6.45e-01 | 98.1% | 99.7% |
| 2p0yA00 | 3.40.50.10680 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains | 0.83 | 79.0 | 6.77e-01 | 98.8% | 98.3% |
| 2ffeA01 | 3.40.50.10680 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains | 0.81 | 74.0 | 6.59e-01 | 95.7% | 98.6% |
| 1v1aA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.73 | 67.0 | 5.37e-01 | 97.5% | 88.7% |
| 5mp7A01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 61.0 | 6.14e-01 | 98.1% | 100.0% |
| 2c4kA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 60.0 | 6.01e-01 | 98.8% | 97.6% |
| 1xv5A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.65 | 59.0 | 5.60e-01 | 98.1% | 100.0% |
| 3rssA01 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.64 | 53.0 | 4.88e-01 | 88.3% | 78.2% |
| 3v3tA01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.64 | 58.0 | 5.39e-01 | 99.4% | 97.1% |
| 4twbA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 56.0 | 5.78e-01 | 93.8% | 100.0% |
| 4l0cA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.63 | 58.0 | 4.93e-01 | 98.1% | 92.9% |
| 8sp0A01 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.63 | 50.0 | 5.19e-01 | 96.3% | 87.7% |
| 1u9yA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 55.0 | 5.70e-01 | 93.8% | 100.0% |
| 2xkbL00 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.63 | 57.0 | 4.37e-01 | 100.0% | 62.0% |
| 8f5dA01 | 3.40.1390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain | 0.63 | 32.0 | 4.09e-01 | 95.7% | 83.9% |
| 4qjiB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.62 | 57.0 | 5.20e-01 | 100.0% | 98.6% |
| 2xitA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 57.0 | 4.71e-01 | 98.1% | 94.2% |
| 2cb0A01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.62 | 46.0 | 4.68e-01 | 98.8% | 79.1% |
| 3otiA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 56.0 | 5.05e-01 | 98.8% | 99.5% |
| 1aipA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 56.0 | 5.43e-01 | 99.4% | 97.8% |
| 1ur3M00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.61 | 55.0 | 4.49e-01 | 98.1% | 86.5% |
| 7qjnA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 55.0 | 4.64e-01 | 100.0% | 90.1% |
| 4amgB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 55.0 | 4.99e-01 | 99.4% | 100.0% |
| 2e4tA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 52.0 | 3.97e-01 | 94.4% | 95.9% |
| 1zd9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 55.0 | 5.46e-01 | 99.4% | 97.6% |
| 4gudB00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.60 | 54.0 | 5.07e-01 | 98.8% | 99.0% |
| 6cv6D00 | 3.40.50.9100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II | 0.60 | 50.0 | 5.24e-01 | 98.8% | 99.3% |
| 4exbB00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.59 | 54.0 | 4.64e-01 | 98.8% | 87.8% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 53.0 | 3.71e-01 | 97.5% | 44.2% |
| 4xk2B00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.59 | 54.0 | 4.33e-01 | 98.8% | 80.9% |
| 1pyfA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.59 | 54.0 | 4.32e-01 | 98.8% | 88.1% |
| 1mv8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 53.0 | 4.96e-01 | 97.5% | 98.0% |
| 2aeuA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 48.0 | 4.35e-01 | 96.9% | 64.5% |
| 1u8zA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 54.0 | 5.38e-01 | 99.4% | 98.8% |
| 4p4gA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 45.0 | 4.86e-01 | 84.6% | 93.5% |
| 3oyzA01 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.59 | 52.0 | 4.42e-01 | 96.9% | 95.1% |
| 4ku4A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 54.0 | 5.34e-01 | 100.0% | 95.9% |
| 1pz1A00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.58 | 53.0 | 4.18e-01 | 98.8% | 82.8% |
| 2wmiA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 53.0 | 4.08e-01 | 99.4% | 84.3% |
| 3wg9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 42.0 | 4.43e-01 | 86.4% | 85.7% |
| 6ei9A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 47.0 | 4.22e-01 | 86.4% | 91.1% |
| 2qs8A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 53.0 | 4.28e-01 | 100.0% | 83.3% |
| 3euaF01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.58 | 46.0 | 4.67e-01 | 100.0% | 87.2% |
| 3uykA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 52.0 | 4.91e-01 | 98.8% | 100.0% |
| 1lt7B00 | 3.20.20.330 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain | 0.57 | 52.0 | 4.18e-01 | 99.4% | 78.4% |
| 4qnwA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 51.0 | 3.97e-01 | 99.4% | 79.7% |
| 2c54A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 51.0 | 4.90e-01 | 98.1% | 88.5% |
| 2csuA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.56 | 48.0 | 4.83e-01 | 98.1% | 91.6% |
| 3wy7A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 47.0 | 4.18e-01 | 96.3% | 62.6% |
| 4ml9A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 50.0 | 4.21e-01 | 99.4% | 82.2% |
| 3vxgA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.56 | 49.0 | 4.04e-01 | 96.9% | 78.3% |
| 1uagA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.55 | 48.0 | 4.55e-01 | 96.3% | 87.3% |
| 3graA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.55 | 49.0 | 4.71e-01 | 97.5% | 91.9% |
| 3q2iA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 47.0 | 4.78e-01 | 100.0% | 93.8% |
| 1zh8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 45.0 | 4.76e-01 | 100.0% | 100.0% |
| 5dqpB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.54 | 48.0 | 3.69e-01 | 100.0% | 96.8% |
| 2dxnA02 | 3.30.750.180 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › GpdQ, beta-strand dimerisation domain | 0.54 | 37.0 | 4.11e-01 | 80.2% | 88.9% |
| 1uyvB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.54 | 49.0 | 4.08e-01 | 100.0% | 75.9% |
| 1sfjB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 49.0 | 4.36e-01 | 99.4% | 93.6% |
| 2r8wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 49.0 | 4.01e-01 | 99.4% | 68.7% |
| 2e7jA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 46.0 | 4.04e-01 | 100.0% | 62.9% |
| 3q9cA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.54 | 47.0 | 3.75e-01 | 97.5% | 91.5% |
| 3cz8A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 47.0 | 4.13e-01 | 96.3% | 86.9% |
| 1wzaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 48.0 | 3.81e-01 | 100.0% | 98.5% |
| 5euvA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 48.0 | 3.97e-01 | 98.8% | 80.1% |
| 3qfeB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 47.0 | 3.86e-01 | 98.1% | 64.9% |
| 3sjnA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.53 | 48.0 | 4.12e-01 | 99.4% | 76.0% |
| 3iteB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.52 | 43.0 | 3.26e-01 | 88.9% | 46.7% |
| 5hj7A01 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 36.0 | 3.78e-01 | 97.5% | 78.2% |
| 2ozlB01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.52 | 47.0 | 4.47e-01 | 100.0% | 91.7% |
| 1gg1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 47.0 | 3.71e-01 | 98.8% | 82.6% |
| 1gv4A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 4.48e-01 | 93.2% | 94.0% |
| 3k8kA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.66e-01 | 100.0% | 96.3% |
| 3i6sA03 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.52 | 36.0 | 3.99e-01 | 100.0% | 90.0% |
| 2ox1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 46.0 | 4.34e-01 | 97.5% | 86.2% |
| 4g0mA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 40.0 | 4.31e-01 | 96.3% | 100.0% |
| 7y11A01 | 3.40.525.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain | 0.50 | 43.0 | 4.04e-01 | 92.6% | 77.5% |
ECOD (87)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945230 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.99 | 97.0 | 7.59e-01 | 100.0% | 100.0% |
| 4493878 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.91 | 87.0 | 6.52e-01 | 99.4% | 91.1% |
| 4151293 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.90 | 86.0 | 6.59e-01 | 98.8% | 98.2% |
| 3288361 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.90 | 85.0 | 6.56e-01 | 98.8% | 97.8% |
| 3953422 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.89 | 85.0 | 6.59e-01 | 98.8% | 99.7% |
| 164359 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.89 | 85.0 | 6.50e-01 | 98.8% | 97.5% |
| 164698 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.88 | 83.0 | 6.43e-01 | 98.1% | 99.4% |
| 3318115 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.88 | 84.0 | 6.00e-01 | 99.4% | 97.3% |
| 3788760 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.88 | 81.0 | 5.95e-01 | 95.7% | 100.0% |
| 3207735 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.88 | 83.0 | 6.18e-01 | 98.1% | 99.2% |
| 5054662 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.86 | 79.0 | 6.45e-01 | 95.7% | 100.0% |
| 4978841 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.85 | 80.0 | 6.21e-01 | 97.5% | 98.7% |
| 4624010 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.83 | 78.0 | 5.95e-01 | 97.5% | 99.7% |
| 4945524 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.83 | 76.0 | 5.93e-01 | 95.1% | 100.0% |
| 4544363 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.82 | 77.0 | 6.04e-01 | 98.1% | 99.7% |
| 4973354 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.81 | 76.0 | 5.96e-01 | 98.8% | 97.5% |
| 4985484 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.81 | 73.0 | 5.82e-01 | 95.1% | 100.0% |
| 4118579 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.80 | 74.0 | 5.82e-01 | 96.9% | 99.7% |
| 4949085 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.68 | 61.0 | 5.01e-01 | 96.3% | 100.0% |
| None | — | 0.67 | 60.0 | 5.83e-01 | 96.9% | 94.4% | |
| 3618802 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.66 | 53.0 | 5.44e-01 | 85.2% | 96.8% |
| 5038373 | 2003.1.1.48 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N | 0.65 | 53.0 | 4.91e-01 | 86.4% | 77.6% |
| 5077685 | 7522.1.1.4 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II | 0.65 | 45.0 | 4.78e-01 | 97.5% | 79.9% |
| 4958114 | 2003.1.1.48 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N | 0.64 | 54.0 | 5.02e-01 | 88.3% | 83.5% |
| 4144686 | 2003.1.1.48 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N | 0.64 | 54.0 | 4.84e-01 | 88.3% | 76.4% |
| 4954069 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.64 | 59.0 | 5.51e-01 | 98.8% | 85.1% |
| 4037347 | 2003.1.1.48 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N | 0.64 | 54.0 | 4.91e-01 | 88.9% | 79.5% |
| 4115681 | 2003.1.1.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA | 0.64 | 54.0 | 5.32e-01 | 99.4% | 84.6% |
| 1787656 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.63 | 57.0 | 5.48e-01 | 98.1% | 100.0% |
| 5045709 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 54.0 | 5.60e-01 | 99.4% | 96.1% |
| 4954065 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.63 | 53.0 | 5.12e-01 | 89.5% | 81.1% |
| 4653628 | 2003.1.1.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA | 0.63 | 53.0 | 5.11e-01 | 99.4% | 80.0% |
| 5038894 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.62 | 50.0 | 5.25e-01 | 85.2% | 100.0% |
| 5078050 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.62 | 57.0 | 5.28e-01 | 99.4% | 85.9% |
| 1200114 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.61 | 56.0 | 4.76e-01 | 98.1% | 68.8% |
| 5050053 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.61 | 57.0 | 5.38e-01 | 99.4% | 86.8% |
| 3271977 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.61 | 57.0 | 5.61e-01 | 99.4% | 97.1% |
| 4065889 | 2007.1.12.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase | 0.61 | 46.0 | 3.86e-01 | 98.8% | 45.3% |
| 4376354 | 2007.1.9.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › Exonuc_VII_L | 0.61 | 46.0 | 4.02e-01 | 98.8% | 51.0% |
| 4236872 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.61 | 46.0 | 4.03e-01 | 98.8% | 51.4% |
| 4633951 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.61 | 45.0 | 3.80e-01 | 96.9% | 44.6% |
| 3982513 | 1.1.7.125 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Exonuc_VII_L | 0.61 | 46.0 | 4.95e-01 | 98.8% | 95.6% |
| 4953258 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.60 | 50.0 | 4.08e-01 | 88.3% | 86.6% |
| 4461540 | 2007.1.2.29 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Exonuc_VII_L | 0.60 | 46.0 | 4.56e-01 | 98.8% | 74.9% |
| 4139792 | 2007.1.3.40 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Exonuc_VII_L | 0.60 | 46.0 | 4.58e-01 | 96.9% | 76.5% |
| 4112442 | 2007.1.2.29 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Exonuc_VII_L | 0.60 | 46.0 | 3.95e-01 | 98.8% | 49.1% |
| 4641415 | 2007.1.9.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › Exonuc_VII_L | 0.60 | 46.0 | 3.90e-01 | 98.8% | 47.3% |
| 4443137 | 2007.1.2.29 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Exonuc_VII_L | 0.60 | 46.0 | 4.44e-01 | 96.9% | 70.3% |
| 4057479 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.60 | 46.0 | 3.77e-01 | 98.8% | 42.6% |
| 3672744 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.60 | 55.0 | 4.94e-01 | 99.4% | 88.4% |
| 4355401 | 2007.1.9.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › Exonuc_VII_L | 0.60 | 46.0 | 4.52e-01 | 98.8% | 74.3% |
| 4977055 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.60 | 55.0 | 5.36e-01 | 99.4% | 92.8% |
| 3975367 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.60 | 46.0 | 3.71e-01 | 98.8% | 40.6% |
| 4650998 | 3755.3.1.562 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Exonuc_VII_L | 0.60 | 46.0 | 3.94e-01 | 98.8% | 49.6% |
| 3971710 | 2.1.1.280 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Exonuc_VII_L | 0.60 | 46.0 | 4.58e-01 | 98.8% | 78.2% |
| 4009011 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.60 | 54.0 | 4.33e-01 | 98.8% | 86.8% |
| 3484321 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 55.0 | 4.92e-01 | 99.4% | 75.1% |
| 5016586 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.60 | 45.0 | 3.99e-01 | 98.1% | 52.7% |
| 3565715 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.60 | 55.0 | 5.26e-01 | 99.4% | 90.2% |
| 4628425 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.60 | 46.0 | 4.48e-01 | 98.8% | 74.3% |
| 5078125 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.60 | 55.0 | 5.33e-01 | 99.4% | 90.0% |
| 4576763 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.60 | 45.0 | 3.73e-01 | 97.5% | 43.8% |
| 3959389 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.59 | 54.0 | 4.37e-01 | 100.0% | 87.9% |
| 4947335 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.59 | 55.0 | 5.41e-01 | 99.4% | 94.7% |
| 4477251 | 2007.1.9.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › Exonuc_VII_L | 0.59 | 45.0 | 3.66e-01 | 97.5% | 41.3% |
| 3591592 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.59 | 54.0 | 4.74e-01 | 99.4% | 73.8% |
| 2601556 | 7512.1.1.38 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › EryCIII-like_N | 0.59 | 50.0 | 4.59e-01 | 88.9% | 98.0% |
| 4264208 | 2007.1.9.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › Exonuc_VII_L | 0.59 | 45.0 | 4.23e-01 | 96.9% | 65.5% |
| 4147766 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.59 | 43.0 | 3.50e-01 | 95.7% | 38.5% |
| 4600414 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.59 | 45.0 | 3.92e-01 | 96.9% | 50.8% |
| 4643300 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.59 | 45.0 | 3.86e-01 | 97.5% | 50.0% |
| 3892362 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.58 | 54.0 | 4.91e-01 | 99.4% | 76.7% |
| 4331470 | 2007.1.9.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › Exonuc_VII_L | 0.58 | 45.0 | 4.48e-01 | 97.5% | 78.8% |
| 3971870 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.58 | 52.0 | 3.99e-01 | 96.3% | 79.4% |
| 4672616 | 2007.1.9.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › Exonuc_VII_L | 0.58 | 45.0 | 3.72e-01 | 98.8% | 44.3% |
| 4391624 | 2007.1.1.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase_3 | 0.58 | 53.0 | 4.69e-01 | 98.8% | 86.5% |
| 4404971 | 5046.1.1.148 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › Exonuc_VII_L | 0.58 | 45.0 | 3.72e-01 | 98.8% | 44.3% |
| 4516472 | 2007.1.1.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase_3 | 0.57 | 53.0 | 4.74e-01 | 99.4% | 90.9% |
| 4000974 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.57 | 51.0 | 5.17e-01 | 98.8% | 97.5% |
| 4099709 | 2003.1.1.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Mannitol_dh | 0.57 | 51.0 | 4.75e-01 | 97.5% | 94.6% |
| 4935429 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.57 | 51.0 | 4.17e-01 | 99.4% | 96.4% |
| 4944764 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.55 | 48.0 | 4.78e-01 | 98.1% | 91.1% |
| 5026485 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.54 | 49.0 | 3.96e-01 | 99.4% | 95.2% |
| 3265988 | 2005.1.1.23 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans | 0.53 | 41.0 | 3.59e-01 | 80.9% | 53.2% |
| 5030367 | 7512.1.1.62 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_3 | 0.53 | 41.0 | 3.99e-01 | 80.2% | 100.0% |
| 4344750 | 2003.1.1.76 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C | 0.52 | 45.0 | 4.34e-01 | 92.6% | 87.2% |
| 3317927 | 7542.1.1.0 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain | 0.52 | 36.0 | 4.00e-01 | 100.0% | 90.0% |
D2
high
residues 46-130
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01933.24 best | CofD | 91.0 | 1.10e-25 | 100.0% | 29.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o2zA00 | 3.40.50.10680 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains | 0.93 | 87.0 | 5.70e-01 | 100.0% | 27.1% |
| 3c3dA02 | 1.10.8.240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain | 0.64 | 54.0 | 5.35e-01 | 90.6% | 100.0% |
| 3e3rA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 40.0 | 3.86e-01 | 81.2% | 100.0% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 41.0 | 3.21e-01 | 84.7% | 38.5% |
| 1escA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 38.0 | 2.69e-01 | 80.0% | 94.7% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 43.0 | 4.07e-01 | 96.5% | 92.5% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.51 | 43.0 | 4.19e-01 | 96.5% | 89.7% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 36.0 | 3.45e-01 | 91.8% | 63.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3288361 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.95 | 91.0 | 5.88e-01 | 100.0% | 26.9% |
| 4151293 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.95 | 91.0 | 5.84e-01 | 100.0% | 26.2% |
| 3318115 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.94 | 90.0 | 5.56e-01 | 100.0% | 33.9% |
| 3788760 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.94 | 90.0 | 5.62e-01 | 100.0% | 38.1% |
| 3953422 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.94 | 90.0 | 5.84e-01 | 100.0% | 27.9% |
| 3207735 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.94 | 89.0 | 5.65e-01 | 100.0% | 28.0% |
| 164359 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.93 | 87.0 | 5.63e-01 | 100.0% | 25.8% |
| 4493878 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.91 | 85.0 | 5.43e-01 | 100.0% | 24.0% |
| 3180312 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.87 | 82.0 | 5.04e-01 | 100.0% | 32.6% |
| 164698 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.72 | 58.0 | 3.89e-01 | 90.6% | 23.1% |
| 1509099 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.55 | 43.0 | 4.01e-01 | 88.2% | 96.5% |
| 3606343 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.54 | 40.0 | 2.88e-01 | 81.2% | 65.6% |
| 4621007 | 2003.1.2.102 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 | 0.53 | 36.0 | 2.93e-01 | 70.6% | 92.8% |
| 4955663 | 4021.1.1.1 ↗ | alpha arrays › alpha-helical domain in 2-methylcitrate dehydratase PrpD › alpha-helical domain in 2-methylcitrate dehydratase PrpD › alpha-helical domain in 2-methylcitrate dehydratase PrpD › SDH_alpha | 0.50 | 39.0 | 2.86e-01 | 87.1% | 77.0% |