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MF375456.1__ASZ72015.1__X__00016
Bact-VirMF375456.1__ASZ72015.1__X__00016
Identity
- Accession:
- MF375456 ↗
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autonotataviridae›
Pradovirus›
Xanthomonas_phage_phi_Xc10
TaxID: 2024237
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-85
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7sxqA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.71 | 41.0 | 2.63e-01 | 100.0% | 13.3% |
| 2p4bB02 | 3.30.200.100 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain | 0.70 | 56.0 | 4.66e-01 | 100.0% | 51.0% |
| 5bukB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.69 | 47.0 | 2.77e-01 | 70.2% | 9.9% |
| 2f8xC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 51.0 | 4.39e-01 | 100.0% | 50.0% |
| 2v1lA00 | 3.10.450.430 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 | 0.67 | 43.0 | 3.30e-01 | 100.0% | 28.7% |
| 5c50B00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.67 | 59.0 | 4.13e-01 | 100.0% | 61.6% |
| 1qnaA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.67 | 60.0 | 5.07e-01 | 100.0% | 73.1% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.66 | 41.0 | 2.71e-01 | 100.0% | 14.1% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.65 | 55.0 | 4.48e-01 | 100.0% | 55.7% |
| 1fo0B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 56.0 | 4.51e-01 | 100.0% | 67.9% |
| 6vu9A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.64 | 53.0 | 3.37e-01 | 100.0% | 19.0% |
| 1xe7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 58.0 | 3.95e-01 | 100.0% | 60.8% |
| 3wlvA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.63 | 51.0 | 3.30e-01 | 94.7% | 53.1% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.63 | 52.0 | 4.00e-01 | 100.0% | 65.8% |
| 3l81A01 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.62 | 54.0 | 4.07e-01 | 100.0% | 69.3% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.61 | 48.0 | 3.79e-01 | 91.2% | 50.0% |
| 1hc7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 50.0 | 3.27e-01 | 100.0% | 48.3% |
| 3fg2P03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.58 | 45.0 | 3.97e-01 | 94.7% | 57.0% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.57 | 46.0 | 3.63e-01 | 100.0% | 59.2% |
| 2vzsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 3.98e-01 | 100.0% | 57.3% |
| 3es1A01 | 2.20.70.150 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 30.0 | 3.49e-01 | 91.2% | 73.0% |
| 3uh0A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 50.0 | 3.13e-01 | 100.0% | 27.0% |
| 2eabB01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.55 | 44.0 | 3.00e-01 | 94.7% | 62.5% |
| 1nyrA03 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 46.0 | 2.95e-01 | 100.0% | 52.2% |
| 1o0vA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 3.85e-01 | 100.0% | 60.0% |
| 5oj2B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.85e-01 | 100.0% | 66.7% |
| 3uezC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.75e-01 | 100.0% | 60.2% |
| 3fmcC01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.53 | 44.0 | 2.90e-01 | 100.0% | 24.5% |
| 2lgnA00 | 2.60.40.2850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.78e-01 | 100.0% | 74.2% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 40.0 | 3.66e-01 | 87.7% | 93.5% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 42.0 | 2.80e-01 | 100.0% | 31.6% |
| 7q5yD01 | 3.30.70.3270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 3.50e-01 | 100.0% | 52.9% |
| 1g8jB00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 35.0 | 2.67e-01 | 71.9% | 57.8% |
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 35.0 | 3.43e-01 | 89.5% | 66.7% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014374 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.82 | 56.0 | 4.87e-01 | 71.9% | 71.8% |
| 3510568 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.82 | 58.0 | 4.87e-01 | 75.4% | 65.3% |
| 4941554 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.82 | 62.0 | 5.06e-01 | 80.7% | 65.0% |
| 5054464 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.81 | 56.0 | 4.85e-01 | 71.9% | 71.8% |
| 3621625 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 48.0 | 3.22e-01 | 100.0% | 17.6% |
| 4467333 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.81 | 57.0 | 4.74e-01 | 73.7% | 64.2% |
| 3287981 | 2.1.1.94 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C | 0.79 | 52.0 | 4.70e-01 | 100.0% | 52.0% |
| 3323590 | 292.2.1.17 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › LOR | 0.76 | 50.0 | 3.97e-01 | 100.0% | 34.5% |
| 3717251 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 48.0 | 4.90e-01 | 100.0% | 74.5% |
| 4055607 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.68 | 53.0 | 3.82e-01 | 84.2% | 70.3% |
| 3924761 | 859.1.1.4 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG13 | 0.68 | 61.0 | 4.17e-01 | 100.0% | 60.0% |
| 3827180 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.68 | 60.0 | 4.31e-01 | 100.0% | 45.5% |
| 3393407 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.67 | 40.0 | 2.46e-01 | 100.0% | 9.6% |
| 4943894 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.67 | 62.0 | 5.14e-01 | 100.0% | 67.4% |
| 3316523 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.67 | 46.0 | 2.99e-01 | 100.0% | 16.7% |
| 4936584 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.66 | 61.0 | 5.03e-01 | 100.0% | 67.4% |
| 4323378 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.64 | 47.0 | 2.95e-01 | 100.0% | 15.5% |
| 3824898 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.63 | 52.0 | 3.63e-01 | 100.0% | 28.9% |
| 5037762 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.62 | 51.0 | 3.68e-01 | 89.5% | 38.7% |
| 3943581 | 881.4.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C | 0.62 | 47.0 | 3.94e-01 | 100.0% | 45.5% |
| 4951648 | 223.3.1.6 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13 | 0.62 | 42.0 | 3.01e-01 | 100.0% | 23.4% |
| 3665100 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.61 | 53.0 | 4.27e-01 | 100.0% | 72.2% |
| 3262565 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 46.0 | 4.09e-01 | 100.0% | 56.5% |
| 4988150 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.61 | 45.0 | 3.83e-01 | 100.0% | 45.7% |
| 3289652 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.61 | 49.0 | 2.93e-01 | 89.5% | 59.8% |
| 3385480 | 319.3.1.3 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › DUF7494 | 0.60 | 46.0 | 3.62e-01 | 100.0% | 37.0% |
| 3724523 | 4121.1.1.7 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 | 0.59 | 45.0 | 2.73e-01 | 98.2% | 13.1% |
| 3838980 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.59 | 41.0 | 2.99e-01 | 75.4% | 71.1% |
| 3689507 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.59 | 47.0 | 3.31e-01 | 100.0% | 27.6% |
| 5044736 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 50.0 | 4.26e-01 | 100.0% | 77.9% |
| 4587796 | 244.2.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C | 0.57 | 45.0 | 4.00e-01 | 96.5% | 58.8% |
| 4943485 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 49.0 | 4.26e-01 | 100.0% | 80.0% |
| 5051354 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 49.0 | 4.20e-01 | 100.0% | 76.8% |
| 4997180 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 49.0 | 3.77e-01 | 100.0% | 59.2% |
| 3615659 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 38.0 | 2.72e-01 | 100.0% | 22.1% |
| 3488710 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.55 | 48.0 | 4.14e-01 | 100.0% | 96.7% |
| 5050651 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 47.0 | 3.97e-01 | 100.0% | 74.0% |
| 4597961 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.54 | 40.0 | 2.58e-01 | 87.7% | 75.4% |
| 3784478 | 11.1.1.409 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bul1_C | 0.53 | 44.0 | 3.00e-01 | 94.7% | 91.6% |
| 3180246 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 45.0 | 3.07e-01 | 100.0% | 40.7% |
| 3677000 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 44.0 | 3.22e-01 | 100.0% | 36.0% |
| 5061403 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.50 | 38.0 | 3.31e-01 | 93.0% | 97.3% |
| 3180973 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.50 | 43.0 | 2.93e-01 | 100.0% | 37.8% |