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MF403008.1__ASV44702.1__X__00096
Bact-VirMF403008.1__ASV44702.1__X__00096
Identity
- Accession:
- MF403008 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Taxonomy
TaxID: 2024264
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-94
Domain cluster:
rep: NC_048807.1__YP_009851569.1__HWC63_gp046__00046__D40-126
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.76 | 55.0 | 4.29e-01 | 74.7% | 60.9% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.70 | 53.0 | 5.40e-01 | 81.3% | 95.6% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.68 | 46.0 | 3.95e-01 | 70.3% | 83.9% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.67 | 53.0 | 4.13e-01 | 84.6% | 60.5% |
| 4oj5B01 | 3.30.2020.50 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.67 | 41.0 | 4.35e-01 | 97.8% | 68.3% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.66 | 52.0 | 4.09e-01 | 87.9% | 62.8% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.64 | 56.0 | 4.33e-01 | 97.8% | 63.1% |
| 2ostD00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 57.0 | 5.02e-01 | 100.0% | 72.9% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 56.0 | 5.16e-01 | 100.0% | 82.4% |
| 3ijmA00 | 3.90.1570.20 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.63 | 47.0 | 4.11e-01 | 81.3% | 74.0% |
| 3qyfA01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.62 | 47.0 | 3.91e-01 | 81.3% | 93.3% |
| 1ekjA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.62 | 46.0 | 3.54e-01 | 79.1% | 77.6% |
| 3lzdA02 | 3.40.50.11850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 2 | 0.59 | 41.0 | 3.93e-01 | 73.6% | 78.0% |
| 3ksmA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 38.0 | 3.25e-01 | 71.4% | 79.3% |
| 2z0fA02 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.55 | 31.0 | 3.56e-01 | 95.6% | 74.6% |
| 6wy9B02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.55 | 42.0 | 4.17e-01 | 100.0% | 78.9% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 47.0 | 4.33e-01 | 98.9% | 76.6% |
| 2f7lA02 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.51 | 37.0 | 3.41e-01 | 76.9% | 61.5% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 33.0 | 3.65e-01 | 75.8% | 84.5% |
| 4j0wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 42.0 | 3.02e-01 | 100.0% | 53.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042023 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.75 | 60.0 | 4.69e-01 | 84.6% | 63.7% |
| 4947545 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.75 | 59.0 | 4.61e-01 | 84.6% | 61.6% |
| 4927000 | 2008.1.1.217 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase | 0.74 | 58.0 | 3.28e-01 | 84.6% | 15.5% |
| 5058512 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.74 | 59.0 | 4.13e-01 | 85.7% | 71.6% |
| 3574786 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.73 | 57.0 | 4.02e-01 | 84.6% | 71.0% |
| 3837602 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 57.0 | 3.93e-01 | 83.5% | 56.7% |
| 5066595 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.72 | 57.0 | 4.40e-01 | 84.6% | 66.0% |
| 5041156 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.71 | 56.0 | 4.60e-01 | 84.6% | 80.6% |
| 5011455 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.71 | 52.0 | 5.48e-01 | 76.9% | 100.0% |
| 3950933 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.70 | 56.0 | 4.02e-01 | 85.7% | 67.5% |
| 5076203 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.69 | 55.0 | 4.30e-01 | 85.7% | 59.5% |
| 3964058 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.69 | 51.0 | 4.42e-01 | 78.0% | 72.1% |
| 5075190 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.69 | 54.0 | 4.57e-01 | 86.8% | 66.3% |
| 3818045 | 4126.1.1.1 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA | 0.66 | 48.0 | 3.45e-01 | 75.8% | 64.4% |
| 3197761 | 3873.1.1.1 ↗ | a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › HGTP_anticodon2 | 0.65 | 48.0 | 4.30e-01 | 78.0% | 85.6% |
| 4933955 | 7592.1.1.6 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N | 0.62 | 46.0 | 3.91e-01 | 78.0% | 92.0% |
| 3577750 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.62 | 45.0 | 3.93e-01 | 76.9% | 71.4% |
| 5026220 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 52.0 | 4.17e-01 | 93.4% | 82.3% |
| 5082574 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.57 | 44.0 | 3.74e-01 | 85.7% | 63.7% |
| 4981806 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.57 | 47.0 | 4.17e-01 | 93.4% | 88.1% |
| 3737649 | 3873.1.1.1 ↗ | a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › HGTP_anticodon2 | 0.56 | 40.0 | 3.79e-01 | 75.8% | 96.5% |
| 4026764 | 3105.1.1.4 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 | 0.56 | 40.0 | 3.40e-01 | 76.9% | 65.6% |
| 4291634 | 4143.1.1.6 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › Pus10_THUMP_arc | 0.55 | 39.0 | 3.16e-01 | 75.8% | 87.8% |
| 3594483 | 3105.1.1.0 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related | 0.55 | 40.0 | 3.52e-01 | 78.0% | 65.7% |
| 5057950 | 3105.1.1.1 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase | 0.54 | 40.0 | 3.49e-01 | 78.0% | 67.1% |
| 4122042 | 3105.1.1.1 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase | 0.54 | 39.0 | 3.49e-01 | 76.9% | 57.8% |
| 3971681 | 3105.1.1.0 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related | 0.53 | 39.0 | 3.49e-01 | 78.0% | 65.9% |
| None | — | 0.52 | 38.0 | 3.13e-01 | 76.9% | 91.2% | |
| 3928952 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.52 | 46.0 | 3.89e-01 | 100.0% | 72.9% |
| 5033143 | 4143.1.1.6 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › Pus10_THUMP_arc | 0.51 | 37.0 | 3.18e-01 | 76.9% | 90.3% |
| 3602662 | 4143.1.1.6 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › Pus10_THUMP_arc | 0.51 | 36.0 | 3.43e-01 | 74.7% | 85.5% |
| 4059404 | 4143.1.1.6 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › Pus10_THUMP_arc | 0.51 | 37.0 | 3.07e-01 | 76.9% | 86.7% |
| 4965070 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.50 | 36.0 | 2.98e-01 | 76.9% | 85.1% |
| 4958105 | 4143.1.1.6 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › Pus10_THUMP_arc | 0.50 | 36.0 | 2.90e-01 | 75.8% | 90.3% |