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MF403008.1__ASV44765.1__X__00696

Bact-Vir

MF403008.1__ASV44765.1__X__00696

Identity

Accession:
MF403008 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-47
PDB
Domain cluster: representative
CATH (68)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.71 57.0 5.25e-01 100.0% 82.5%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 58.0 4.32e-01 100.0% 41.0%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.70 59.0 4.67e-01 100.0% 81.8%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 58.0 4.62e-01 100.0% 44.9%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.69 58.0 4.26e-01 100.0% 62.6%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 45.0 3.03e-01 72.5% 17.0%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 54.0 4.16e-01 100.0% 38.5%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 43.0 2.93e-01 72.5% 16.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.24e-01 100.0% 38.8%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 55.0 4.20e-01 100.0% 40.8%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 4.22e-01 100.0% 41.0%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 47.0 3.44e-01 87.5% 27.1%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 4.11e-01 100.0% 41.0%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.17e-01 100.0% 42.3%
6ofsA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.63 52.0 3.35e-01 100.0% 46.5%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.63 48.0 4.11e-01 87.5% 74.6%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.08e-01 100.0% 44.0%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 3.79e-01 100.0% 34.2%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 3.87e-01 100.0% 36.4%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 3.98e-01 100.0% 37.6%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 3.51e-01 80.0% 37.6%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 46.0 4.69e-01 82.5% 89.7%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 3.91e-01 100.0% 43.5%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.01e-01 100.0% 38.5%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.62 48.0 4.17e-01 97.5% 61.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 3.80e-01 100.0% 41.3%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 3.45e-01 100.0% 27.0%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 49.0 4.07e-01 100.0% 92.9%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 3.43e-01 100.0% 25.7%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 3.81e-01 100.0% 42.1%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 3.66e-01 100.0% 34.4%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 3.98e-01 87.5% 60.6%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.50e-01 100.0% 33.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 44.0 3.87e-01 87.5% 61.2%
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.59 41.0 3.49e-01 80.0% 90.0%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.58 46.0 3.73e-01 100.0% 67.4%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.58 43.0 2.95e-01 80.0% 95.9%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 43.0 3.81e-01 87.5% 65.2%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.58 45.0 2.87e-01 92.5% 26.6%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.58 43.0 3.24e-01 87.5% 33.1%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.58 47.0 3.12e-01 100.0% 36.6%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 4.15e-01 97.5% 77.6%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.36e-01 97.5% 50.4%
3wisA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.57 48.0 3.22e-01 100.0% 95.0%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.57 47.0 4.42e-01 100.0% 90.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.86e-01 87.5% 64.0%
2uuvB01 3.40.462.40 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix 0.56 46.0 2.90e-01 97.5% 66.3%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 3.66e-01 87.5% 61.2%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 3.67e-01 87.5% 63.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 38.0 3.72e-01 87.5% 64.6%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 48.0 3.79e-01 100.0% 65.1%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 46.0 2.80e-01 100.0% 45.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.77e-01 87.5% 68.0%
1v57A03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 39.0 2.83e-01 87.5% 91.7%
3kz5E00 6.10.140.1550 Special › Helix non-globular › Helix Hairpins › 0.54 39.0 3.67e-01 77.5% 72.9%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.32e-01 100.0% 46.2%
4gj1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 39.0 2.57e-01 87.5% 92.6%
1oqkA00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.53 37.0 3.19e-01 80.0% 65.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.53 37.0 3.32e-01 80.0% 71.2%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.32e-01 92.5% 58.4%
2lqoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 39.0 3.31e-01 100.0% 93.2%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.40e-01 97.5% 46.6%
7w09A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 42.0 2.68e-01 100.0% 51.8%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 44.0 3.66e-01 100.0% 94.4%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.71e-01 100.0% 24.1%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.14e-01 80.0% 45.7%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.74e-01 100.0% 91.5%
3o83A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 41.0 2.39e-01 95.0% 44.6%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3572708 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 57.0 4.12e-01 100.0% 32.2%
3247329 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 58.0 4.22e-01 100.0% 34.5%
3621726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 58.0 4.14e-01 100.0% 31.2%
3261009 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 58.0 4.43e-01 100.0% 43.0%
3887127 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 56.0 4.00e-01 100.0% 30.8%
3264236 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 54.0 4.12e-01 100.0% 37.0%
4615793 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.68 45.0 3.50e-01 100.0% 31.1%
3634755 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 58.0 4.13e-01 100.0% 34.4%
3890749 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 55.0 4.26e-01 100.0% 41.1%
3264278 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 57.0 4.05e-01 100.0% 31.5%
3906768 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 56.0 4.02e-01 100.0% 33.6%
3260650 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 57.0 4.20e-01 100.0% 37.3%
3515993 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.67 53.0 3.81e-01 100.0% 30.0%
3270411 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 56.0 4.13e-01 100.0% 35.7%
3870917 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 55.0 3.74e-01 100.0% 25.5%
3861121 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 57.0 4.15e-01 100.0% 36.5%
3476418 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 54.0 3.83e-01 100.0% 28.9%
3934850 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 45.0 3.27e-01 70.0% 26.7%
3388895 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.66 51.0 3.83e-01 100.0% 32.7%
3262550 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.66 55.0 3.97e-01 100.0% 32.5%
4100107 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 54.0 4.08e-01 100.0% 38.2%
3680657 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.65 55.0 3.16e-01 100.0% 10.4%
3992625 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 54.0 4.05e-01 100.0% 37.1%
3503857 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 55.0 4.08e-01 100.0% 36.4%
3912099 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 53.0 4.00e-01 100.0% 36.2%
3966925 304.107.1.2 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › SoxG 0.65 50.0 3.39e-01 100.0% 84.1%
3859895 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.65 53.0 3.16e-01 100.0% 11.2%
3807010 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 54.0 3.80e-01 100.0% 30.0%
3797608 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 49.0 3.71e-01 90.0% 38.2%
3545477 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 56.0 3.90e-01 100.0% 29.3%
3991560 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 54.0 4.18e-01 100.0% 41.1%
3562938 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 55.0 3.95e-01 100.0% 32.8%
3533574 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 54.0 3.75e-01 100.0% 29.0%
3939128 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 53.0 3.91e-01 100.0% 34.5%
4940177 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.55e-01 100.0% 77.1%
3537696 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.64 55.0 3.78e-01 100.0% 27.3%
3778852 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.64 56.0 3.86e-01 100.0% 29.3%
3896415 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.64 45.0 3.50e-01 77.5% 36.8%
3475007 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 55.0 4.05e-01 100.0% 36.4%
3884716 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 52.0 3.64e-01 100.0% 27.4%
3899275 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 51.0 3.61e-01 100.0% 27.4%
169110 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 48.0 4.13e-01 87.5% 75.7%
4650117 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.63 49.0 4.14e-01 97.5% 56.2%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.63 49.0 3.28e-01 100.0% 20.0%
3633728 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 53.0 3.94e-01 100.0% 36.5%
3510664 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.63 54.0 3.78e-01 100.0% 29.3%
3401989 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 3.55e-01 100.0% 27.1%
3624498 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 3.72e-01 100.0% 32.0%
4236508 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 3.60e-01 100.0% 31.4%
4032952 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.63 48.0 3.14e-01 100.0% 18.7%
3923930 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 51.0 3.82e-01 100.0% 34.5%
4325664 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.62 47.0 4.40e-01 100.0% 70.0%
3258360 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 3.54e-01 87.5% 39.0%
5001380 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.13e-01 100.0% 85.0%
3406688 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 51.0 3.86e-01 100.0% 38.2%
3479095 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.34e-01 85.0% 40.9%
4202176 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.61 47.0 3.15e-01 100.0% 19.5%
3474420 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.61 51.0 3.51e-01 100.0% 39.3%
3874654 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 52.0 3.60e-01 100.0% 27.3%
3291448 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 3.79e-01 100.0% 44.4%
4385448 220.1.1.154 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.58 48.0 3.13e-01 97.5% 26.7%
3068467 5077.1.1.1 extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chloroa_b-bind 0.58 48.0 2.95e-01 97.5% 21.4%
3792816 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.57 45.0 3.42e-01 100.0% 35.8%
3493556 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.43e-01 97.5% 47.3%
3797728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.59e-01 100.0% 58.8%
3418933 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.55 45.0 2.96e-01 100.0% 32.2%
3576021 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 39.0 3.00e-01 87.5% 30.8%
3640935 3543.1.1.4 alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.55 47.0 2.91e-01 97.5% 41.3%
5027663 244.2.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.54 41.0 3.64e-01 87.5% 96.9%
3276546 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.54 47.0 2.76e-01 100.0% 99.1%
3256547 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.40e-01 100.0% 49.0%
3995389 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 42.0 3.05e-01 97.5% 29.0%
3640588 6043.2.1.0 a+b two layers › yfeY-like › Teichoic acid transporter subunit TagH C-terminal domain › Teichoic acid transporter subunit TagH C-terminal domain 0.51 41.0 3.17e-01 100.0% 38.7%
D2 high residues 278-464
PDB
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 48.0 5.54e-01 100.0% 92.0%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 28.0 3.50e-01 82.9% 70.7%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.59 29.0 3.55e-01 100.0% 70.8%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.57 30.0 3.82e-01 85.6% 85.5%
3b34A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.57 33.0 3.44e-01 89.3% 59.4%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 22.0 2.87e-01 93.0% 61.2%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.56 38.0 4.37e-01 92.0% 92.9%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 28.0 3.62e-01 72.2% 85.3%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 27.0 3.54e-01 73.8% 83.8%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 23.0 3.06e-01 70.6% 69.9%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 28.0 3.65e-01 95.2% 91.8%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 26.0 3.43e-01 77.5% 84.8%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 26.0 3.40e-01 72.2% 84.5%
3fcsA03 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.53 31.0 3.61e-01 85.6% 77.7%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 25.0 3.42e-01 74.9% 92.6%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980535 1.1.13.51 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.81 57.0 6.69e-01 100.0% 98.5%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.79 56.0 6.56e-01 87.7% 100.0%
3580020 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 63.0 6.26e-01 98.9% 80.5%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.78 47.0 5.89e-01 88.8% 97.4%
3965192 1.1.13.67 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.76 47.0 5.91e-01 88.8% 100.0%
5062396 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 56.0 6.42e-01 84.0% 100.0%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.75 49.0 5.66e-01 100.0% 87.9%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 48.0 5.72e-01 99.5% 94.6%
4032562 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.73 49.0 5.80e-01 88.8% 96.9%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.73 50.0 5.23e-01 100.0% 75.0%
3581358 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 52.0 5.67e-01 99.5% 88.4%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.72 48.0 5.73e-01 91.4% 100.0%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 47.0 5.48e-01 98.9% 91.2%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.71 49.0 5.58e-01 99.5% 91.5%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.70 49.0 5.72e-01 88.8% 98.5%
4954561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 49.0 5.66e-01 100.0% 98.5%
184986 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.70 45.0 5.39e-01 98.9% 96.8%
2101663 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.70 51.0 5.45e-01 98.9% 85.9%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.69 47.0 5.10e-01 100.0% 81.4%
4988100 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 44.0 5.26e-01 99.5% 98.4%
2101633 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.66 50.0 5.32e-01 96.3% 87.4%
3976188 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.66 51.0 5.39e-01 96.3% 90.3%
5071965 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.63 22.0 3.18e-01 88.8% 65.3%
4938164 11.1.1.138 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.61 30.0 3.80e-01 86.6% 76.4%
3245466 11.1.1.44 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.59 29.0 3.44e-01 87.2% 66.9%
4937629 11.1.1.138 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.58 28.0 3.29e-01 86.1% 62.3%
3633830 11.1.1.44 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.58 28.0 3.45e-01 87.2% 70.0%
3952678 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 28.0 3.99e-01 80.7% 100.0%
3821846 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 27.0 3.39e-01 81.8% 75.5%
4970221 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 26.0 3.32e-01 86.1% 75.2%
4943323 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.54 28.0 3.52e-01 73.8% 83.7%
5041672 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.53 27.0 3.43e-01 71.7% 82.5%
4584621 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.52 26.0 3.35e-01 70.6% 83.0%
3981520 872.3.1.4 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › DUF4156 0.52 27.0 3.70e-01 88.2% 100.0%
4187036 306.7.1.0 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain 0.51 31.0 3.78e-01 78.1% 99.1%
3740450 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.51 23.0 3.30e-01 75.9% 90.0%
4994692 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.50 26.0 3.23e-01 73.8% 80.0%
2755609 218.2.1.1 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.50 35.0 3.74e-01 73.3% 80.1%
D3 medium residues 51-182
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iakA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 51.0 4.42e-01 70.5% 43.2%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 58.0 4.85e-01 75.8% 47.6%
6iknD01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 58.0 4.53e-01 77.3% 39.0%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.76 56.0 4.39e-01 75.8% 45.5%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.75 53.0 4.63e-01 72.7% 62.8%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 54.0 4.39e-01 75.8% 51.8%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.73 53.0 4.69e-01 87.9% 53.6%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.73 51.0 4.28e-01 100.0% 44.1%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.68 55.0 4.28e-01 84.8% 57.8%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.67 58.0 4.17e-01 93.9% 35.9%
1yc9A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.66 55.0 4.12e-01 93.2% 36.1%
2ap3A00 1.20.120.570 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like 0.64 52.0 4.50e-01 84.8% 92.7%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.55 51.0 3.84e-01 100.0% 72.5%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.54 48.0 4.24e-01 93.2% 82.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3213527 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.93 69.0 5.13e-01 75.8% 36.1%
3576467 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.90 67.0 4.90e-01 75.8% 33.8%
3908810 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.90 66.0 4.93e-01 75.8% 34.9%
3739242 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.89 61.0 5.61e-01 70.5% 57.0%
3908132 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.86 63.0 4.97e-01 75.8% 43.3%
3488631 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.86 64.0 4.88e-01 76.5% 37.8%
3435097 4177.1.1.11 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 0.85 63.0 4.85e-01 75.8% 38.5%
3488978 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.85 64.0 4.80e-01 77.3% 40.3%
3519973 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.84 62.0 4.94e-01 75.8% 42.0%
4479045 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.84 60.0 4.95e-01 73.5% 46.4%
3740490 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.80 59.0 4.82e-01 75.8% 50.4%
3498560 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.80 72.0 5.58e-01 94.7% 75.1%
3366153 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 69.0 6.32e-01 94.7% 72.9%
3620978 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.77 67.0 4.88e-01 90.2% 40.9%
3232199 4177.1.1.10 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH 0.77 57.0 4.39e-01 75.8% 51.9%
3235225 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.77 56.0 4.71e-01 75.8% 49.5%
3268765 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.76 55.0 4.48e-01 75.0% 42.1%
3577907 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.74 54.0 4.31e-01 75.8% 66.7%
3477880 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.72 53.0 4.06e-01 75.8% 58.3%
3236352 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.69 50.0 4.47e-01 74.2% 53.0%
3170491 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.69 60.0 5.04e-01 93.2% 63.6%
4963648 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.68 57.0 3.79e-01 88.6% 39.0%
3497227 3343.1.1.0 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) 0.65 49.0 3.15e-01 78.0% 52.3%
3389713 174.1.1.29 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 0.63 46.0 4.52e-01 99.2% 70.0%
3385727 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.61 53.0 4.20e-01 94.7% 60.7%
3225902 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.57 47.0 4.43e-01 96.2% 72.5%
3624755 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 46.0 4.15e-01 96.2% 72.2%