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MF403008.1__AUZ95091.1__X__00332

Bact-Vir

MF403008.1__AUZ95091.1__X__00332

Identity

Accession:
MF403008 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Polybotosvirus› Agrobacterium_phage_Atu_ph07

TaxID: 2024264

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-61
PDB
Domain cluster: rep: MG752970.1__AVH85091.1__RsoM2USA_163__00163__D2-67
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 4.13e-01 100.0% 69.8%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 52.0 4.42e-01 100.0% 79.8%
2rijA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 3.68e-01 100.0% 62.7%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.32e-01 84.7% 43.9%
3g7mA00 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.58 36.0 2.76e-01 100.0% 24.5%
7chiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 41.0 2.88e-01 100.0% 21.3%
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 40.0 2.69e-01 74.6% 20.6%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.58 46.0 3.92e-01 100.0% 52.0%
4gucA00 2.60.40.3720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 3.92e-01 100.0% 48.7%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.57 48.0 4.12e-01 100.0% 89.2%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 48.0 3.69e-01 100.0% 40.1%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.57 39.0 3.94e-01 100.0% 71.7%
1b33N01 3.30.1490.170 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) 0.55 42.0 4.36e-01 100.0% 89.1%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.55 46.0 3.72e-01 100.0% 91.9%
7wsoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.53e-01 100.0% 54.1%
1tljB00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.53 38.0 2.80e-01 100.0% 25.0%
5tf0B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.73e-01 100.0% 63.1%
1rocA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.53 46.0 3.46e-01 100.0% 41.9%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 40.0 3.24e-01 100.0% 39.0%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 2.75e-01 88.1% 72.6%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 45.0 4.27e-01 100.0% 98.6%
3hxiA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.52 40.0 3.06e-01 91.5% 36.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 39.0 3.68e-01 100.0% 65.8%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.52 41.0 2.80e-01 98.3% 35.0%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.51 41.0 3.32e-01 100.0% 84.9%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.03e-01 88.1% 72.9%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.19e-01 100.0% 53.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3397468 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.64 40.0 3.30e-01 100.0% 35.2%
3894112 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.63 55.0 4.07e-01 100.0% 53.8%
3787001 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 48.0 3.60e-01 88.1% 77.0%
3258875 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 55.0 4.06e-01 100.0% 54.7%
5084101 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 4.32e-01 100.0% 58.9%
3413788 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.60 49.0 3.72e-01 100.0% 37.9%
3932049 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.60 46.0 3.34e-01 84.7% 49.7%
4284041 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.59 48.0 3.31e-01 100.0% 26.7%
3636985 11.1.1.416 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 0.59 52.0 3.72e-01 100.0% 44.4%
3582833 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 48.0 3.92e-01 100.0% 48.2%
3170806 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.59 52.0 3.77e-01 100.0% 58.8%
3565284 223.2.1.21 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › AP-5_subunit_s1 0.59 45.0 3.23e-01 88.1% 76.0%
3251650 10.2.1.84 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Seipin 0.58 48.0 3.69e-01 100.0% 75.5%
3753133 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 49.0 3.12e-01 100.0% 22.1%
4270868 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.57 44.0 3.07e-01 84.7% 43.3%
153078 11.1.1.219 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF5065 0.57 49.0 3.92e-01 100.0% 48.7%
5036166 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 45.0 4.08e-01 100.0% 63.5%
3492718 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 49.0 4.13e-01 100.0% 57.0%
4608687 11.1.1.416 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 0.57 51.0 3.56e-01 100.0% 37.2%
4388794 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 46.0 3.73e-01 100.0% 74.6%
3457076 317.1.1.1 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.55 43.0 3.11e-01 89.8% 29.9%
4960680 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.55 42.0 3.16e-01 88.1% 70.0%
3598544 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.55 46.0 3.40e-01 100.0% 96.6%
3488745 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.55 47.0 3.90e-01 100.0% 63.6%
3932304 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 37.0 2.84e-01 72.9% 86.9%
3493644 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.54 45.0 3.42e-01 100.0% 67.3%
4024194 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 48.0 3.59e-01 100.0% 43.3%
3381245 11.2.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF7651 0.54 45.0 3.53e-01 100.0% 97.9%
4587861 3610.1.1.2 ↗ a+b complex topology › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › THDPS_M,THDPS_N 0.54 45.0 3.55e-01 100.0% 42.1%
3520168 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.54 48.0 3.32e-01 100.0% 39.5%
3527281 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.54 37.0 2.69e-01 72.9% 84.9%
3475092 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 42.0 2.89e-01 100.0% 23.7%
4981984 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.87e-01 100.0% 57.0%
3577596 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 44.0 3.50e-01 100.0% 71.0%
3503253 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.53 36.0 3.26e-01 74.6% 56.8%
3661686 304.114.1.2 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.53 43.0 3.71e-01 98.3% 97.1%
3357534 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 44.0 3.77e-01 100.0% 56.2%
3490934 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.53 43.0 3.28e-01 100.0% 37.2%
4135250 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 44.0 2.80e-01 100.0% 18.0%
3554445 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 45.0 3.26e-01 100.0% 33.5%
4424527 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 42.0 3.40e-01 100.0% 60.7%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.59e-01 83.1% 64.0%
3208200 206.1.3.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.52 45.0 2.76e-01 100.0% 56.9%
3593291 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 3.05e-01 86.4% 75.9%
3224990 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.62e-01 100.0% 57.4%
5082586 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.54e-01 100.0% 50.0%
3539303 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 44.0 3.11e-01 100.0% 29.0%
3243866 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 43.0 3.77e-01 100.0% 68.0%
4991832 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.52 41.0 2.82e-01 100.0% 24.9%
3195208 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.13e-01 100.0% 65.3%
4542786 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 43.0 3.06e-01 100.0% 29.5%
3649347 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.51 42.0 3.32e-01 100.0% 41.4%
3867993 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 42.0 3.03e-01 100.0% 29.8%
3531351 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 42.0 2.91e-01 100.0% 30.8%
3517068 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.51 40.0 3.97e-01 100.0% 81.5%
3756345 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.51 42.0 3.22e-01 100.0% 46.3%
3918550 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 44.0 3.21e-01 100.0% 42.4%
3736222 206.1.3.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.50 43.0 2.64e-01 100.0% 58.3%
4288663 223.1.1.28 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N 0.50 42.0 2.89e-01 100.0% 63.7%
D2 medium residues 67-132
PDB
Domain cluster: representative