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MF403008.1__AUZ95180.1__X__00421

Bact-Vir

MF403008.1__AUZ95180.1__X__00421

Identity

Accession:
MF403008 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Polybotosvirus› Agrobacterium_phage_Atu_ph07

TaxID: 2024264

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-80
PDB
Domain cluster: rep: KT870145.1__AMO44176.1__DSS3P8_118__00118__D4-60
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.63 49.0 2.83e-01 81.8% 44.6%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.63 38.0 3.91e-01 100.0% 61.3%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 37.0 3.79e-01 89.6% 60.3%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.63 38.0 2.54e-01 85.7% 16.1%
2mfiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 38.0 3.59e-01 90.9% 50.0%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.54 36.0 4.02e-01 88.3% 87.1%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.53 44.0 3.67e-01 90.9% 73.1%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 37.0 3.90e-01 100.0% 84.1%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 4.35e-01 93.5% 80.9%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.53 38.0 3.32e-01 94.8% 49.6%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.53 42.0 3.44e-01 92.2% 81.6%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 33.0 3.04e-01 80.5% 46.2%
2vqrA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.52 36.0 2.21e-01 89.6% 12.0%
1j71A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 43.0 3.53e-01 96.1% 80.7%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 38.0 3.31e-01 76.6% 99.1%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 37.0 2.79e-01 75.3% 82.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.51 42.0 3.92e-01 90.9% 93.8%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.56e-01 98.7% 76.5%
6ixwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 42.0 3.31e-01 92.2% 61.1%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228484 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 41.0 2.85e-01 97.4% 18.8%
5071886 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.63 40.0 4.02e-01 89.6% 62.5%
5011765 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.63 38.0 3.13e-01 93.5% 34.1%
3513280 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 44.0 4.08e-01 92.2% 59.0%
4322675 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.61 46.0 4.03e-01 97.4% 55.5%
3220737 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.61 39.0 2.67e-01 88.3% 18.3%
3244243 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 38.0 2.86e-01 97.4% 24.6%
3939076 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.60 44.0 4.01e-01 92.2% 59.0%
4944386 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.03e-01 97.4% 60.0%
3595376 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.33e-01 96.1% 38.1%
4957336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.01e-01 100.0% 18.0%
4980465 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.76e-01 87.0% 63.3%
3250163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.98e-01 96.1% 66.3%
3079243 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.55 44.0 4.25e-01 97.4% 76.5%
3912125 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 44.0 4.01e-01 96.1% 67.0%
3823929 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.54 43.0 3.67e-01 92.2% 55.0%
3827764 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 40.0 2.73e-01 79.2% 51.2%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 4.09e-01 92.2% 74.4%
4960002 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.84e-01 90.9% 68.9%
2323829 3484.1.1.2 ↗ a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.53 38.0 3.01e-01 94.8% 36.6%
4013175 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.52 38.0 2.60e-01 76.6% 65.7%
4949985 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 3.73e-01 94.8% 73.8%
3782385 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.52 44.0 2.72e-01 100.0% 16.0%
4664955 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.52 42.0 4.00e-01 98.7% 75.6%
5081361 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.88e-01 92.2% 68.0%
3660563 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.92e-01 83.1% 92.3%
4200480 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 41.0 3.82e-01 98.7% 68.0%
4949942 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.94e-01 94.8% 76.1%
3699563 63.1.1.4 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH_1 0.51 42.0 3.74e-01 96.1% 75.8%
3872163 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.51 38.0 3.15e-01 94.8% 44.3%
4429302 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.51 39.0 2.63e-01 83.1% 49.8%
3409083 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.50 43.0 3.53e-01 92.2% 74.1%
3509246 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.50 42.0 3.37e-01 90.9% 74.7%
3254948 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 41.0 2.97e-01 88.3% 65.1%
3265256 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.50 38.0 2.61e-01 83.1% 50.3%
3465613 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.50 43.0 2.82e-01 94.8% 23.8%
5013797 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.50 44.0 4.20e-01 98.7% 84.4%