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MF403009.1__ASV44796.1__X__00053

Bact-Vir

MF403009.1__ASV44796.1__X__00053

Identity

Accession:
MF403009 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roslyckyvirus› Agrobacterium_phage_Atu_ph08

TaxID: 2024265

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-178
PDB
Domain cluster: rep: NC_048679.1__YP_009835549.1__HWB34_gp74__00074__D9-156
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05869.17 best Dam 41.8 1.30e-10 82.8% 66.9%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 57.0 5.32e-01 84.1% 88.0%
1m6yA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 56.0 5.22e-01 84.1% 97.3%
7f8aA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 56.0 5.34e-01 84.1% 97.7%
3tm4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 55.0 5.24e-01 86.8% 89.7%
1uwvA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 55.0 4.89e-01 86.1% 75.4%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 53.0 5.00e-01 86.8% 89.2%
1zkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 51.0 4.91e-01 82.8% 91.3%
1zq9A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 58.0 5.46e-01 98.7% 95.0%
1dljA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 52.0 4.68e-01 87.4% 96.6%
3evnA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 41.0 4.65e-01 80.1% 86.2%
3ftdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 57.0 5.37e-01 96.7% 93.2%
1qyrA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 57.0 5.34e-01 99.3% 95.1%
7n3yC01 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.62 52.0 3.99e-01 92.1% 88.6%
2qytA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 53.0 4.97e-01 95.4% 92.5%
2yvlA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 54.0 4.98e-01 96.7% 88.9%
2o3jB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 49.0 4.46e-01 89.4% 99.5%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.59 34.0 4.17e-01 90.7% 91.4%
1mqsA01 3.40.50.2060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 0.59 45.0 4.67e-01 79.5% 97.1%
1uu1A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 50.0 4.53e-01 92.7% 75.4%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 34.0 4.26e-01 88.7% 100.0%
4dcmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 52.0 4.99e-01 98.7% 84.5%
1zcjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 4.69e-01 94.7% 89.7%
3c7aA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 4.52e-01 96.0% 89.8%
1yb2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 51.0 4.46e-01 98.7% 76.5%
2vt3B02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 39.0 4.13e-01 93.4% 80.3%
3tixB02 3.40.1010.30 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 0.56 40.0 4.36e-01 81.5% 88.7%
7lldA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 47.0 4.08e-01 93.4% 70.6%
1npyA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 30.0 3.58e-01 96.7% 78.0%
3sy8A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 45.0 4.74e-01 94.0% 99.3%
4lgcA00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 47.0 3.46e-01 93.4% 52.7%
1d7uA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 46.0 3.87e-01 93.4% 76.9%
1j5xA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 38.0 3.90e-01 73.5% 76.7%
2hnhA01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 43.0 3.63e-01 89.4% 95.9%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 40.0 3.24e-01 89.4% 41.3%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 4.23e-01 99.3% 89.9%
3n0xA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 43.0 4.25e-01 91.4% 92.7%
2xdqA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 34.0 3.71e-01 86.1% 81.5%
7dsmA01 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.51 42.0 3.59e-01 91.4% 83.5%
4mcjG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 4.05e-01 85.4% 96.8%
3k0bA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 41.0 3.88e-01 86.8% 91.6%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083195 2003.1.5.103 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Dam 0.87 80.0 8.05e-01 94.7% 97.3%
3945051 2003.1.5.103 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Dam 0.80 71.0 6.88e-01 92.1% 92.7%
3945266 2003.1.5.103 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Dam 0.80 72.0 7.02e-01 92.7% 90.6%
3700041 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.78 71.0 6.27e-01 98.0% 90.7%
4937160 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.72 58.0 5.31e-01 84.1% 85.6%
4372161 2003.1.5.155 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_25 0.72 58.0 5.30e-01 84.1% 85.1%
4543896 2003.1.5.155 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_25 0.72 58.0 5.26e-01 84.1% 84.0%
4953217 2003.1.5.55 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.72 58.0 5.18e-01 83.4% 81.9%
5001508 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.72 58.0 5.16e-01 84.1% 86.7%
4975207 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.72 58.0 5.44e-01 84.1% 90.6%
4944007 2003.1.5.62 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.72 67.0 5.10e-01 100.0% 92.5%
4434568 102.1.1.6 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Methyltransf_5 0.69 55.0 5.04e-01 84.8% 89.4%
4198622 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.69 55.0 4.91e-01 84.1% 87.6%
4973031 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.67 52.0 4.92e-01 82.1% 89.4%
5043418 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.64 59.0 5.41e-01 98.7% 83.6%
4954164 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.64 59.0 5.19e-01 100.0% 77.7%
None — 0.64 59.0 5.61e-01 99.3% 94.3%
5065356 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.64 59.0 5.37e-01 99.3% 85.6%
3598989 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 58.0 5.28e-01 98.7% 85.0%
5028620 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.63 58.0 5.23e-01 98.7% 84.0%
4943190 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.63 58.0 5.17e-01 99.3% 79.0%
4979937 328.3.1.0 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.62 32.0 4.40e-01 76.8% 100.0%
5059619 7588.1.1.2 ↗ a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA 0.60 34.0 4.09e-01 76.8% 85.3%
3503214 2003.1.5.182 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_11 0.60 53.0 5.26e-01 94.0% 100.0%
3721871 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.60 54.0 4.75e-01 99.3% 84.9%
4018927 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.60 50.0 4.03e-01 91.4% 74.3%
5010353 328.2.1.1 ↗ a+b two layers › IF3-like › C-terminal domain of ProRS › C-terminal domain of ProRS › ProRS-C_1 0.59 34.0 4.36e-01 78.8% 100.0%
5000537 2003.1.5.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.59 53.0 4.89e-01 98.7% 88.2%
3282982 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.58 51.0 4.40e-01 94.7% 98.3%
5079940 2003.1.1.27 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PDH_N 0.58 49.0 4.38e-01 96.0% 63.6%
4972745 7577.1.1.1 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.58 49.0 3.70e-01 92.7% 44.0%
3412401 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.57 51.0 4.94e-01 97.4% 94.7%
3400659 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.57 50.0 4.88e-01 95.4% 93.9%
1030952 2003.1.5.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.57 51.0 4.87e-01 98.7% 98.3%
5007767 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.56 45.0 3.74e-01 84.1% 73.5%
3389590 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.56 50.0 4.70e-01 98.0% 94.1%
3303600 2003.1.5.121 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 0.56 51.0 4.72e-01 99.3% 83.2%
2516842 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 48.0 3.71e-01 93.4% 68.6%
3479403 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 30.0 3.32e-01 95.4% 69.2%
1734342 7592.1.1.6 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N 0.52 41.0 4.23e-01 99.3% 89.4%
None — 0.51 45.0 3.06e-01 96.0% 87.5%
4980205 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 42.0 3.77e-01 86.8% 94.3%
3834940 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 45.0 3.10e-01 98.7% 88.2%
5051120 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.50 43.0 3.63e-01 94.0% 83.0%
D2 high residues 187-246
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 71.0 7.35e-01 100.0% 96.5%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 73.0 6.40e-01 100.0% 73.3%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 73.0 6.49e-01 100.0% 75.3%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 71.0 6.91e-01 100.0% 88.1%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 72.0 5.98e-01 100.0% 70.6%
3majA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 6.61e-01 100.0% 88.3%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 72.0 6.75e-01 100.0% 93.2%
2xrnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 68.0 6.70e-01 100.0% 87.5%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 72.0 6.30e-01 100.0% 69.3%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 71.0 6.16e-01 100.0% 70.3%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 71.0 6.36e-01 100.0% 74.4%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 70.0 6.51e-01 100.0% 85.3%
1fokA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 68.0 5.97e-01 100.0% 67.8%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 69.0 6.19e-01 100.0% 78.0%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 67.0 6.31e-01 100.0% 88.9%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 5.49e-01 100.0% 58.2%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 59.0 5.53e-01 100.0% 68.8%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 66.0 5.83e-01 100.0% 71.6%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 64.0 5.73e-01 100.0% 69.1%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 66.0 5.83e-01 100.0% 70.1%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 67.0 5.91e-01 100.0% 69.0%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.74 66.0 4.44e-01 100.0% 28.4%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 65.0 5.86e-01 100.0% 78.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 65.0 5.39e-01 100.0% 63.2%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 5.99e-01 100.0% 85.9%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 64.0 6.41e-01 100.0% 96.7%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 5.66e-01 98.3% 75.0%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 4.77e-01 100.0% 51.5%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 5.48e-01 100.0% 71.1%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 4.50e-01 100.0% 39.4%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 65.0 6.02e-01 100.0% 84.0%
1fp2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 63.0 5.45e-01 100.0% 64.6%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 64.0 4.85e-01 100.0% 44.5%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 5.69e-01 100.0% 76.7%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.98e-01 100.0% 91.9%
5u8kA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 5.19e-01 100.0% 62.6%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 62.0 6.10e-01 100.0% 93.8%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 59.0 5.60e-01 100.0% 85.3%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 4.98e-01 100.0% 62.8%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 4.72e-01 100.0% 46.3%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 4.91e-01 100.0% 56.6%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.26e-01 100.0% 73.3%
4yo2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.49e-01 100.0% 84.5%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 4.58e-01 100.0% 53.3%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.65 55.0 4.90e-01 98.3% 86.4%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 5.33e-01 100.0% 88.1%
1qasA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 48.0 4.35e-01 85.0% 68.2%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.72e-01 100.0% 74.2%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.80e-01 100.0% 81.2%
4fqgA02 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.61 48.0 4.82e-01 100.0% 88.5%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.45e-01 100.0% 68.3%
1tizA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 49.0 4.75e-01 91.7% 86.6%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.76e-01 100.0% 91.7%
2kvsA00 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.54 40.0 3.72e-01 91.7% 61.3%
3p5pA01 1.50.10.130 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain 0.53 40.0 2.79e-01 85.0% 95.4%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.90e-01 98.3% 67.4%
2i7aA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 41.0 3.21e-01 96.7% 52.2%
1bvsA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 39.0 3.81e-01 88.3% 90.0%
2k5tA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.34e-01 95.0% 75.0%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943786 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 73.0 6.89e-01 100.0% 78.6%
3741636 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 78.0 6.65e-01 100.0% 67.7%
3224625 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.83 75.0 6.96e-01 100.0% 78.7%
5053312 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 71.0 6.05e-01 100.0% 61.1%
4331694 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 71.0 7.12e-01 100.0% 95.0%
5078990 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 72.0 7.25e-01 100.0% 96.7%
3890162 101.1.2.526 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27602 0.81 73.0 6.77e-01 100.0% 86.7%
5073913 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 72.0 7.00e-01 100.0% 89.2%
4956461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 71.0 6.36e-01 100.0% 79.5%
4952882 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 71.0 6.44e-01 100.0% 78.8%
4601931 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 70.0 5.86e-01 100.0% 59.0%
5047202 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 68.0 6.50e-01 100.0% 82.9%
3971509 101.1.2.851 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27731 0.78 70.0 6.11e-01 100.0% 70.0%
5074767 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 72.0 7.02e-01 100.0% 95.4%
4304583 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 69.0 6.78e-01 100.0% 92.3%
5023957 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.77 68.0 6.19e-01 100.0% 81.2%
4980866 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 70.0 6.32e-01 100.0% 93.8%
3624335 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 67.0 4.76e-01 100.0% 33.7%
2417725 101.1.2.467 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_Rok 0.76 67.0 5.61e-01 100.0% 57.3%
4503143 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.76 66.0 3.92e-01 100.0% 14.4%
4965236 101.1.2.952 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29290 0.75 65.0 6.53e-01 100.0% 96.7%
5045695 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 5.84e-01 100.0% 69.4%
5044560 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 4.42e-01 100.0% 28.7%
3454929 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 65.0 4.93e-01 100.0% 46.9%
4948576 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.74 67.0 6.54e-01 100.0% 93.8%
5062912 101.1.2.894 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.74 65.0 5.81e-01 100.0% 70.6%
3667030 101.1.2.466 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C 0.74 65.0 6.00e-01 100.0% 78.2%
3677397 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 65.0 3.78e-01 100.0% 12.1%
3255111 101.1.2.397 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.73 64.0 6.28e-01 100.0% 96.9%
3670673 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.73 64.0 5.28e-01 100.0% 63.6%
3772634 101.1.2.397 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.73 64.0 5.85e-01 100.0% 78.8%
3720700 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.73 61.0 5.62e-01 100.0% 71.2%
3729903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 6.16e-01 100.0% 92.9%
4796697 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.73 65.0 5.87e-01 100.0% 77.8%
3830447 101.1.2.397 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.72 63.0 5.77e-01 100.0% 78.8%
3507464 101.1.2.397 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.72 62.0 5.65e-01 100.0% 78.6%
3382056 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 61.0 3.69e-01 100.0% 14.0%
3239585 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.72 65.0 6.17e-01 100.0% 91.4%
5025623 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.72 65.0 5.87e-01 100.0% 76.2%
5060198 101.1.2.894 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.72 61.0 6.14e-01 95.0% 95.0%
4448206 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.72 65.0 6.01e-01 100.0% 81.3%
5050212 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.35e-01 100.0% 64.2%
5041921 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.71 64.0 5.91e-01 100.0% 80.0%
3955679 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.71 64.0 5.57e-01 100.0% 67.8%
4950232 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 62.0 5.46e-01 100.0% 68.9%
4932057 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.71 63.0 5.76e-01 100.0% 76.2%
4255377 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.71 64.0 5.93e-01 100.0% 81.3%
4197192 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.71 64.0 5.78e-01 100.0% 76.2%
4022706 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.71 62.0 5.60e-01 100.0% 72.5%
4933273 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.70 63.0 5.49e-01 100.0% 70.0%
4454324 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.70 63.0 5.31e-01 100.0% 61.0%
3620820 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 4.62e-01 100.0% 44.1%
3650642 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.70 60.0 5.47e-01 100.0% 75.3%
4563894 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.70 63.0 5.58e-01 100.0% 71.8%
5078708 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.69 62.0 5.76e-01 100.0% 81.3%
4994982 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.69 61.0 5.72e-01 100.0% 80.0%
3723084 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.69 61.0 5.83e-01 100.0% 88.6%
3242401 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.09e-01 100.0% 67.4%
4979200 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 5.45e-01 81.7% 100.0%
4395674 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.68 60.0 5.34e-01 100.0% 70.6%
3988425 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.67 57.0 5.25e-01 100.0% 72.5%
4369318 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 5.85e-01 100.0% 100.0%
5002376 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 4.80e-01 98.3% 56.2%
3588536 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.67 59.0 5.36e-01 100.0% 75.0%
5049282 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.06e-01 100.0% 69.4%
5071799 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 4.98e-01 96.7% 98.9%
5018179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.56e-01 100.0% 92.3%
3175904 101.1.2.113 ↗ alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 0.66 56.0 4.25e-01 100.0% 43.1%
3587302 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 5.00e-01 100.0% 75.0%
4034117 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.62 53.0 4.79e-01 100.0% 70.6%
3251599 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.75e-01 98.3% 78.7%
3775031 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.59 46.0 4.34e-01 90.0% 81.3%
3712946 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 45.0 4.13e-01 96.7% 68.8%
3712947 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 43.0 4.15e-01 98.3% 80.0%