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MF418016.1__AWD93009.1__HSE3_gp057__00057
Bact-VirMF418016.1__AWD93009.1__HSE3_gp057__00057
Identity
- Accession:
- MF418016 ↗
- Kingdom:
- phage
Quality
74.5
mean pLDDT
Cluster
View cluster (78 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-85_239-256
Domain cluster:
representative
D2
medium
residues 86-124_390-423
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q5qH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.62 | 52.0 | 3.80e-01 | 98.6% | 73.7% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 41.0 | 3.02e-01 | 72.6% | 95.1% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 46.0 | 4.77e-01 | 87.7% | 98.6% |
| 1ucnA00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.57 | 47.0 | 3.84e-01 | 94.5% | 86.1% |
| 2wp4B00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.54 | 41.0 | 3.45e-01 | 83.6% | 91.7% |
| 3uj9A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 2.98e-01 | 87.7% | 94.6% |
| 2r7rA07 | 3.30.230.140 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 40.0 | 3.42e-01 | 86.3% | 73.3% |
| 1ea0A04 | 2.160.20.60 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Glutamate synthase, alpha subunit, C-terminal domain | 0.51 | 38.0 | 2.61e-01 | 80.8% | 58.0% |
| 1vphB00 | 2.60.120.460 | Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like | 0.50 | 40.0 | 3.40e-01 | 93.2% | 81.8% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.50 | 37.0 | 3.75e-01 | 79.5% | 90.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004294 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.84 | 74.0 | 4.88e-01 | 95.9% | 79.3% |
| 3511359 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.78 | 68.0 | 4.41e-01 | 95.9% | 66.3% |
| 5000 | 846.1.1.1 ↗ | a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 | 0.51 | 40.0 | 3.40e-01 | 93.2% | 81.2% |
D3
medium
residues 125-238
Domain cluster:
rep: MN988559.1__QIG77325.1__EVB32_357__00337__D134-237
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07230.17 best | Portal_T4 | 30.7 | 2.00e-07 | 99.1% | 22.0% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4my0C01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 3.64e-01 | 81.6% | 83.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082725 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.60 | 49.0 | 5.22e-01 | 93.0% | 100.0% |
| 4034609 | 4056.1.1.1 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 | 0.58 | 51.0 | 5.19e-01 | 92.1% | 100.0% |
| 3826751 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.57 | 32.0 | 3.72e-01 | 93.0% | 77.5% |
| 2756510 | 4.1.1.131 ↗ | beta barrels › SH3 › SH3 › SH3 › MLVIN_C | 0.56 | 29.0 | 3.17e-01 | 93.0% | 58.4% |
| 3272363 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.55 | 31.0 | 3.39e-01 | 95.6% | 65.3% |
| 5046317 | 213.1.1.29 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 | 0.51 | 39.0 | 3.82e-01 | 81.6% | 89.2% |
| 3895141 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.50 | 34.0 | 3.37e-01 | 92.1% | 63.2% |
D4
medium
residues 257-329
Domain cluster:
rep: Filtrate_w_scaffold_6_prodigal-single.1__X__X__00314__D95-163
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07230.17 best | Portal_T4 | 61.5 | 9.00e-17 | 100.0% | 16.5% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ghhA00 | 3.30.910.10 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like | 0.67 | 47.0 | 4.58e-01 | 94.5% | 66.7% |
| 2aajA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.62 | 54.0 | 4.39e-01 | 93.2% | 88.4% |
| 4o89A02 | 3.30.360.20 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain | 0.60 | 44.0 | 4.08e-01 | 95.9% | 60.6% |
| 2gaxA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.59 | 51.0 | 4.20e-01 | 97.3% | 90.3% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.57 | 37.0 | 3.40e-01 | 90.4% | 50.0% |
| 3c6vA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.55 | 48.0 | 3.87e-01 | 97.3% | 76.9% |
| 2hraA01 | 3.40.30.70 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.55 | 37.0 | 3.49e-01 | 94.5% | 56.2% |
| 2b5eA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 3.66e-01 | 100.0% | 52.8% |
| 3apoA06 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 41.0 | 3.60e-01 | 100.0% | 55.8% |
| 6g62A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 41.0 | 3.61e-01 | 100.0% | 55.7% |
| 5ykwA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 41.0 | 3.67e-01 | 100.0% | 59.4% |
| 6lyxA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 42.0 | 3.62e-01 | 97.3% | 54.7% |
| 1wjkA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 39.0 | 3.86e-01 | 97.3% | 75.6% |
| 2l57A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 43.0 | 3.67e-01 | 97.3% | 54.0% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 45.0 | 4.34e-01 | 94.5% | 89.0% |
| 4o32C00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 43.0 | 3.99e-01 | 100.0% | 72.5% |
| 8a6tB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 43.0 | 3.59e-01 | 98.6% | 55.7% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 45.0 | 3.72e-01 | 100.0% | 59.0% |
| 1r5pB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 44.0 | 4.06e-01 | 95.9% | 96.8% |
| 1w4vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 41.0 | 3.63e-01 | 97.3% | 59.1% |
| 3d6iA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 40.0 | 3.61e-01 | 100.0% | 60.0% |
| 6i1cA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 41.0 | 3.64e-01 | 97.3% | 60.2% |
| 1nw2A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 41.0 | 3.65e-01 | 97.3% | 61.9% |
| 2k18A02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 42.0 | 3.61e-01 | 100.0% | 57.7% |
| 3qdnA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 41.0 | 3.55e-01 | 97.3% | 57.5% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3988057 | 3227.1.1.1 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC | 0.62 | 47.0 | 2.96e-01 | 82.2% | 27.5% |
| 5004557 | 3228.1.1.0 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III | 0.60 | 45.0 | 3.88e-01 | 79.5% | 97.3% |
| 4963979 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.59 | 40.0 | 4.10e-01 | 98.6% | 72.9% |
| 4955873 | 2485.1.1.147 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF2703 | 0.59 | 46.0 | 4.08e-01 | 94.5% | 58.1% |
| 3240138 | 2004.1.1.240 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Utp25_C | 0.59 | 53.0 | 3.94e-01 | 100.0% | 95.6% |
| 5082943 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.58 | 43.0 | 3.89e-01 | 98.6% | 57.1% |
| 3653586 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 49.0 | 3.72e-01 | 100.0% | 57.8% |
| 3487886 | 2485.2.1.0 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 0.56 | 44.0 | 3.94e-01 | 98.6% | 60.0% |
| 3608344 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 43.0 | 3.47e-01 | 100.0% | 42.1% |
| 4338175 | 2485.1.1.27 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB | 0.56 | 46.0 | 4.08e-01 | 100.0% | 61.8% |
| 11281 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.56 | 45.0 | 3.73e-01 | 100.0% | 49.6% |
| 4652977 | 2485.1.1.27 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB | 0.55 | 46.0 | 3.97e-01 | 100.0% | 59.1% |
| 4386701 | 310.2.1.35 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 | 0.55 | 40.0 | 3.17e-01 | 76.7% | 73.8% |
| 1889993 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.54 | 32.0 | 2.27e-01 | 93.2% | 19.1% |
| 3516611 | 2485.1.1.96 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like_DJC16_3rd | 0.54 | 47.0 | 3.80e-01 | 100.0% | 54.0% |
| 3344258 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.54 | 43.0 | 3.80e-01 | 97.3% | 59.6% |
| 3538211 | 2485.1.1.96 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like_DJC16_3rd | 0.53 | 47.0 | 3.85e-01 | 100.0% | 54.1% |
| 5050971 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.53 | 42.0 | 3.39e-01 | 100.0% | 45.3% |
| 3600619 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 45.0 | 3.87e-01 | 100.0% | 74.6% |
| 3574592 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.52 | 45.0 | 3.37e-01 | 97.3% | 45.8% |
| 3996377 | 2485.1.1.96 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like_DJC16_3rd | 0.52 | 45.0 | 3.68e-01 | 100.0% | 56.6% |
| 3249562 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.52 | 42.0 | 3.65e-01 | 100.0% | 55.8% |
| 4974260 | 2485.1.1.38 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 | 0.52 | 40.0 | 3.92e-01 | 97.3% | 76.2% |
| 3250933 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 40.0 | 3.63e-01 | 100.0% | 61.0% |
| 3589191 | 142.1.1.10 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 | 0.52 | 37.0 | 3.76e-01 | 75.3% | 85.7% |
| 3928406 | 2485.1.1.133 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF26968, PF26976 | 0.51 | 45.0 | 2.94e-01 | 100.0% | 24.5% |
| 3727322 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.51 | 43.0 | 3.17e-01 | 95.9% | 55.2% |
| 4618205 | 604.1.1.150 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 | 0.51 | 36.0 | 3.08e-01 | 75.3% | 82.5% |
| 3410338 | 2485.1.1.155 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin, PF26968, PF26973 | 0.51 | 43.0 | 2.76e-01 | 100.0% | 18.5% |
| 4533353 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.50 | 44.0 | 3.27e-01 | 100.0% | 98.0% |
| 3727825 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.50 | 41.0 | 3.68e-01 | 100.0% | 61.8% |
| 5026294 | 2485.1.1.38 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 | 0.50 | 42.0 | 3.60e-01 | 97.3% | 57.4% |
| 3512946 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 44.0 | 3.37e-01 | 98.6% | 63.4% |
| 4024909 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.50 | 43.0 | 2.90e-01 | 100.0% | 84.4% |
| 3719376 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 43.0 | 3.31e-01 | 100.0% | 50.5% |
| 3496409 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.50 | 41.0 | 2.72e-01 | 94.5% | 26.8% |
| 4011884 | 2485.1.1.20 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like | 0.50 | 41.0 | 3.69e-01 | 98.6% | 63.8% |
D5
medium
residues 424-479
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 58.0 | 5.73e-01 | 87.5% | 80.0% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 55.0 | 5.46e-01 | 87.5% | 81.4% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.67 | 57.0 | 5.22e-01 | 98.2% | 84.4% |
| 3doeB00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.66 | 49.0 | 3.88e-01 | 80.4% | 50.0% |
| 2honA02 | 1.20.1250.30 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.61 | 50.0 | 3.61e-01 | 87.5% | 54.8% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 44.0 | 4.14e-01 | 83.9% | 66.7% |
| 7ar7E01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.58 | 41.0 | 4.07e-01 | 83.9% | 69.8% |
| 1sy7A02 | 1.20.1370.20 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain | 0.55 | 38.0 | 3.72e-01 | 75.0% | 79.7% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.55 | 44.0 | 3.79e-01 | 89.3% | 64.0% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.50 | 33.0 | 3.22e-01 | 73.2% | 58.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5021813 | 5058.1.1.101 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF1622 | 0.76 | 67.0 | 5.45e-01 | 100.0% | 89.5% |
| 3639217 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.72 | 64.0 | 4.43e-01 | 98.2% | 69.4% |
| 5069130 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.71 | 50.0 | 5.27e-01 | 75.0% | 86.0% |
| 3462011 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.65 | 52.0 | 4.58e-01 | 91.1% | 58.8% |
| 3686904 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.62 | 48.0 | 3.36e-01 | 87.5% | 57.9% |
| 4822508 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.59 | 48.0 | 4.27e-01 | 91.1% | 61.4% |