←Back to structures
MF418016.1__AWD93032.1__HSE3_gp080__00080
Bact-VirMF418016.1__AWD93032.1__HSE3_gp080__00080
Identity
- Accession:
- MF418016 ↗
- Kingdom:
- phage
Quality
78.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 18-154
Domain cluster:
rep: BML_08042016_6_5m_scaffold_2_prodigal-single.1__X__X__00189__D27-135
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04717.19 best | Phage_base_V | 45.5 | 1.10e-11 | 64.2% | 96.0% |
D2
medium
residues 155-201_216-322
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4by2B00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.77 | 58.0 | 5.85e-01 | 100.0% | 77.4% |
| 3jtyB01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.61 | 56.0 | 4.14e-01 | 99.4% | 65.4% |
| 4bumX00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.57 | 49.0 | 4.03e-01 | 92.2% | 53.4% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 43.0 | 3.52e-01 | 81.2% | 53.3% |
| 3dueA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.52 | 38.0 | 4.13e-01 | 74.7% | 97.6% |
| 5nz7A01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.52 | 38.0 | 2.93e-01 | 74.0% | 80.5% |
| 2x1cB01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 37.0 | 2.99e-01 | 72.1% | 62.4% |
| 3w9aA00 | 2.60.120.1160 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 37.0 | 3.20e-01 | 74.0% | 72.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943894 | 77.1.1.7 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 | 0.73 | 45.0 | 5.02e-01 | 83.1% | 76.8% |
| 4008120 | 5.1.5.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 | 0.72 | 45.0 | 5.03e-01 | 83.1% | 80.0% |
| 3702212 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.71 | 63.0 | 6.01e-01 | 100.0% | 81.7% |
| 3971642 | 5084.5.1.22 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 | 0.69 | 64.0 | 5.18e-01 | 100.0% | 80.4% |
| 4018864 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.66 | 60.0 | 3.98e-01 | 100.0% | 38.7% |
| 3664957 | 5084.5.1.57 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF28611 | 0.65 | 55.0 | 4.26e-01 | 90.9% | 43.9% |
| 4606000 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.65 | 45.0 | 3.97e-01 | 70.1% | 94.9% |
| 4028624 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.63 | 54.0 | 4.33e-01 | 90.9% | 52.8% |
| 4188949 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.62 | 55.0 | 3.77e-01 | 96.8% | 48.5% |
| 3363227 | 5084.5.3.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TamB | 0.62 | 54.0 | 3.79e-01 | 94.2% | 42.5% |
| 3241230 | 5087.1.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 | 0.61 | 50.0 | 4.44e-01 | 87.7% | 93.2% |
| 3469478 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.60 | 47.0 | 4.03e-01 | 81.8% | 58.3% |
| 3441531 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.58 | 52.0 | 4.16e-01 | 95.5% | 96.3% |
| 3598820 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.56 | 51.0 | 4.20e-01 | 100.0% | 55.6% |
| 2819930 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.56 | 43.0 | 3.85e-01 | 80.5% | 96.3% |
| 3254045 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.55 | 51.0 | 4.13e-01 | 100.0% | 96.8% |
| 4334199 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.55 | 42.0 | 4.65e-01 | 82.5% | 100.0% |
| 3294919 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.54 | 44.0 | 3.30e-01 | 87.0% | 37.9% |
| 3593043 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.53 | 38.0 | 2.43e-01 | 74.7% | 21.6% |
| 3989353 | 9.9.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 | 0.53 | 38.0 | 4.19e-01 | 78.6% | 91.2% |
| 5017958 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 37.0 | 3.84e-01 | 73.4% | 94.0% |
| 3359773 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 45.0 | 3.43e-01 | 96.1% | 43.5% |
| 4408604 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.52 | 47.0 | 4.01e-01 | 98.7% | 83.6% |
| 3295998 | 12.3.1.21 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 | 0.51 | 36.0 | 2.84e-01 | 72.1% | 94.0% |