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MF431616.1__AYP28071.1__vBLenPICBM2__11__00011

Bact-Vir

MF431616.1__AYP28071.1__vBLenPICBM2__11__00011

Identity

Accession:
MF431616 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Veravirus› Lentibacter_phage_vB_LenP_ICBM2

TaxID: 2847823

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-176
PDB
Domain cluster: rep: KF356198.1__AGR48546.1__A4L_19__00019__D1-101_186-205
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01612.27 best DNA_pol_A_exo1 31.6 2.00e-07 86.2% 86.7%
PF13482.13 RNase_H_2 27.2 4.70e-06 63.2% 55.1%
D2 medium residues 210-302
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 33.0 2.81e-01 95.7% 35.6%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 44.0 3.79e-01 93.5% 66.7%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 35.0 2.82e-01 72.0% 90.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4418704 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.55 45.0 3.87e-01 91.4% 68.4%
4928824 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 37.0 3.74e-01 76.3% 100.0%
4961292 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.50 35.0 3.79e-01 77.4% 90.7%