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MF431616.1__AYP28107.1__vBLenPICBM2__48__00048
Bact-VirMF431616.1__AYP28107.1__vBLenPICBM2__48__00048
Identity
- Accession:
- MF431616 ↗
- Kingdom:
- phage
Quality
95.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Zobellviridae›
Veravirus›
Lentibacter_phage_vB_LenP_ICBM2
TaxID: 2847823
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-71
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.56 | 43.0 | 4.14e-01 | 84.3% | 92.7% |
| 5sviB00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.54 | 27.0 | 3.07e-01 | 97.1% | 58.5% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 4.18e-01 | 88.6% | 87.8% |
| 1ok0A00 | 2.60.40.20 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor | 0.51 | 36.0 | 3.54e-01 | 72.9% | 100.0% |
D2
high
residues 79-123
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16778.11 best | Phage_tail_APC | 38.3 | 1.40e-09 | 91.1% | 70.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 70.0 | 6.06e-01 | 100.0% | 62.9% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 55.0 | 5.30e-01 | 100.0% | 100.0% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.60 | 43.0 | 3.83e-01 | 86.7% | 50.6% |
| 2pgsA02 | 1.10.3550.10 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like | 0.59 | 48.0 | 3.63e-01 | 95.6% | 52.1% |
| 4toiA02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 44.0 | 4.35e-01 | 100.0% | 95.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4469296 | 3809.1.1.2 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP | 0.83 | 73.0 | 6.35e-01 | 100.0% | 65.7% |
| 4975820 | 4133.1.1.0 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like | 0.73 | 59.0 | 5.45e-01 | 93.3% | 76.7% |
| 3282208 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.72 | 62.0 | 5.02e-01 | 100.0% | 54.4% |
| 3204414 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.68 | 54.0 | 3.26e-01 | 100.0% | 15.0% |
| 5045350 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 53.0 | 3.87e-01 | 100.0% | 35.4% |
| 3957488 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.59 | 48.0 | 3.84e-01 | 97.8% | 45.6% |