←Back to structures
MF459647.1__ASU03733.1__JOAD_182__00182
Bact-VirMF459647.1__ASU03733.1__JOAD_182__00182
Identity
- Accession:
- MF459647 ↗
- Kingdom:
- phage
Quality
73.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Risingsunvirus›
Erwinia_phage_vB_EamM_Joad
TaxID: 2026081
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-72
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.67 | 39.0 | 4.06e-01 | 100.0% | 60.3% |
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 46.0 | 3.80e-01 | 78.8% | 99.2% |
| 4esjA01 | 3.40.210.30 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain | 0.63 | 48.0 | 3.64e-01 | 81.8% | 59.0% |
| 3pfyA01 | 3.30.200.90 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.59 | 36.0 | 3.57e-01 | 98.5% | 57.7% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.57 | 38.0 | 3.49e-01 | 100.0% | 53.6% |
| 2o8eA01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.56 | 49.0 | 4.07e-01 | 100.0% | 72.7% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 42.0 | 3.31e-01 | 83.3% | 59.2% |
| 4oxiA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 42.0 | 2.61e-01 | 83.3% | 27.3% |
| 4qdgA02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 49.0 | 3.91e-01 | 100.0% | 92.6% |
| 1wn9A00 | 3.40.1530.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › TTHA1528-like | 0.55 | 48.0 | 3.93e-01 | 100.0% | 73.0% |
| 7uehA01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.53 | 46.0 | 3.89e-01 | 100.0% | 83.8% |
| 3lfjB00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.51 | 41.0 | 3.16e-01 | 92.4% | 69.9% |
| 2x12A01 | 2.60.40.2010 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.08e-01 | 95.5% | 63.7% |
| 2yjgA02 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.50 | 43.0 | 3.05e-01 | 100.0% | 80.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3607934 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 47.0 | 3.48e-01 | 81.8% | 52.0% |
| 4620724 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.61 | 47.0 | 3.85e-01 | 83.3% | 96.7% |
| 3515746 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.60 | 48.0 | 3.54e-01 | 100.0% | 35.0% |
| 3700430 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.57 | 47.0 | 3.32e-01 | 100.0% | 35.5% |
| 4889370 | 3239.1.1.0 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 | 0.56 | 34.0 | 2.60e-01 | 97.0% | 26.1% |
| 4931776 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 44.0 | 3.24e-01 | 100.0% | 32.9% |
| 3555330 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.55 | 43.0 | 2.87e-01 | 86.4% | 68.8% |
| 5051525 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.55 | 44.0 | 2.80e-01 | 100.0% | 18.7% |
| 3600391 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 44.0 | 3.62e-01 | 100.0% | 48.0% |
| 4307705 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.54 | 49.0 | 3.08e-01 | 100.0% | 31.3% |
| 4660505 | 2008.1.1.186 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_9 | 0.54 | 41.0 | 3.24e-01 | 83.3% | 66.9% |
| None | — | 0.54 | 49.0 | 3.09e-01 | 100.0% | 31.8% | |
| None | — | 0.53 | 48.0 | 3.02e-01 | 100.0% | 31.8% | |
| 4958249 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.52 | 42.0 | 2.88e-01 | 89.4% | 65.5% |
| None | — | 0.52 | 42.0 | 2.75e-01 | 89.4% | 61.0% | |
| 3956535 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 41.0 | 3.21e-01 | 100.0% | 38.1% |
| 3628154 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.52 | 46.0 | 2.93e-01 | 100.0% | 67.4% |
| 3797637 | 4291.1.1.0 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein | 0.50 | 40.0 | 2.59e-01 | 92.4% | 36.3% |