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MF472893.1__ASZ75210.1__PBI_MISSWHITE_44__00042
Bact-VirMF472893.1__ASZ75210.1__PBI_MISSWHITE_44__00042
Identity
- Accession:
- MF472893 ↗
- Kingdom:
- phage
Quality
75.2
mean pLDDT
Taxonomy
TaxID: 2024297
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.69 | 61.0 | 4.32e-01 | 100.0% | 97.5% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 55.0 | 4.35e-01 | 96.2% | 85.8% |
| 6l3tA01 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.66 | 57.0 | 3.91e-01 | 100.0% | 66.8% |
| 3zmdA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 42.0 | 3.01e-01 | 98.1% | 23.0% |
| 4e84B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 48.0 | 2.98e-01 | 81.1% | 92.9% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.63 | 47.0 | 3.22e-01 | 81.1% | 68.1% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 51.0 | 3.83e-01 | 92.5% | 94.2% |
| 3df7A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 45.0 | 3.32e-01 | 77.4% | 40.1% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 41.0 | 3.46e-01 | 73.6% | 37.9% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 41.0 | 3.47e-01 | 73.6% | 43.3% |
| 3h1qA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 41.0 | 3.27e-01 | 73.6% | 66.1% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 41.0 | 2.81e-01 | 77.4% | 55.0% |
| 4abyD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 45.0 | 2.77e-01 | 94.3% | 13.8% |
| 7nasX01 | 3.30.300.70 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › RimP-like superfamily, N-terminal | 0.59 | 43.0 | 3.81e-01 | 79.2% | 55.7% |
| 8p2bA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.58 | 41.0 | 3.54e-01 | 73.6% | 51.2% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.58 | 40.0 | 3.62e-01 | 75.5% | 51.9% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 40.0 | 3.44e-01 | 81.1% | 46.7% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.54 | 43.0 | 3.21e-01 | 88.7% | 99.3% |
| 3tcaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 36.0 | 3.06e-01 | 71.7% | 40.0% |
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.53 | 41.0 | 3.03e-01 | 90.6% | 83.7% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 40.0 | 3.41e-01 | 84.9% | 48.9% |
| 3ng7X01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 42.0 | 2.78e-01 | 86.8% | 25.3% |
| 3ty4B00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 39.0 | 2.48e-01 | 90.6% | 66.1% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.52 | 37.0 | 2.78e-01 | 83.0% | 26.2% |
| 3qfmA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 37.0 | 2.57e-01 | 90.6% | 29.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943930 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.71 | 50.0 | 5.18e-01 | 79.2% | 80.0% |
| 3321360 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.67 | 49.0 | 4.46e-01 | 81.1% | 76.0% |
| 3423947 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.67 | 46.0 | 2.92e-01 | 71.7% | 32.8% |
| 3683470 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.65 | 48.0 | 3.23e-01 | 84.9% | 24.3% |
| 3177406 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 55.0 | 4.03e-01 | 100.0% | 76.1% |
| 4974447 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 52.0 | 3.97e-01 | 90.6% | 84.2% |
| 3623139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.63 | 55.0 | 3.56e-01 | 100.0% | 56.4% |
| 3934802 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.63 | 45.0 | 3.73e-01 | 77.4% | 78.9% |
| 3680555 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.63 | 51.0 | 4.21e-01 | 90.6% | 53.7% |
| 5033035 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.01e-01 | 94.3% | 89.0% |
| 3713000 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.61 | 45.0 | 3.66e-01 | 83.0% | 76.4% |
| 3999192 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 47.0 | 4.13e-01 | 84.9% | 57.5% |
| 4949578 | 3957.1.1.0 ↗ | a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 | 0.59 | 44.0 | 4.34e-01 | 86.8% | 81.7% |
| 3684539 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.58 | 47.0 | 2.98e-01 | 86.8% | 32.6% |
| 1224463 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.57 | 41.0 | 4.26e-01 | 83.0% | 83.7% |
| 5046612 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.57 | 41.0 | 3.62e-01 | 75.5% | 66.7% |
| 5041543 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.57 | 49.0 | 3.68e-01 | 100.0% | 81.4% |
| 3300895 | 375.13.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › ubiquitin | 0.57 | 40.0 | 4.03e-01 | 81.1% | 72.7% |
| 5060353 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 42.0 | 2.85e-01 | 81.1% | 34.1% |
| 3798928 | 59.1.4.2 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 | 0.56 | 47.0 | 2.76e-01 | 94.3% | 29.7% |
| 4151822 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.56 | 47.0 | 4.25e-01 | 100.0% | 69.3% |
| 4934021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.10e-01 | 81.1% | 35.0% |
| 3960522 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.54 | 47.0 | 4.15e-01 | 100.0% | 83.7% |
| 3753029 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.53 | 37.0 | 4.15e-01 | 73.6% | 92.5% |
| 3349683 | 64.5.1.0 ↗ | beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB | 0.52 | 38.0 | 3.62e-01 | 75.5% | 85.0% |
| 3453248 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 35.0 | 3.49e-01 | 81.1% | 67.3% |
| 2393451 | 4104.1.1.1 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 | 0.52 | 42.0 | 3.64e-01 | 94.3% | 95.6% |
| 1117773 | 1.1.13.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_A-dom_C,DTP-pb9_A-dom_N | 0.51 | 39.0 | 3.64e-01 | 83.0% | 74.6% |