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MF472896.1__ASZ75349.1__PBI_JOSHKAYV_8__00008
Bact-VirMF472896.1__ASZ75349.1__PBI_JOSHKAYV_8__00008
Identity
- Accession:
- MF472896 ↗
- Kingdom:
- phage
Quality
96.3
mean pLDDT
Taxonomy
TaxID: 2024294
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-83
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.79 | 31.0 | 4.47e-01 | 91.5% | 78.9% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 36.0 | 3.33e-01 | 100.0% | 44.5% |
| 1xeuA02 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 38.0 | 3.79e-01 | 93.9% | 61.4% |
| 1vwxB03 | 3.30.1430.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › | 0.59 | 51.0 | 4.55e-01 | 100.0% | 88.6% |
| 1h6uA03 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 36.0 | 3.42e-01 | 93.9% | 49.5% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.56 | 30.0 | 2.78e-01 | 91.5% | 38.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.55 | 45.0 | 3.33e-01 | 92.7% | 86.6% |
| 4ckbD02 | 3.20.100.20 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › | 0.55 | 49.0 | 3.68e-01 | 100.0% | 58.0% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 48.0 | 3.97e-01 | 100.0% | 75.0% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 29.0 | 3.06e-01 | 100.0% | 53.5% |
| 7s7rA01 | 2.60.40.2860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 45.0 | 3.75e-01 | 91.5% | 65.7% |
| 1d5cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 39.0 | 3.13e-01 | 76.8% | 96.9% |
| 3wlvA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.52 | 44.0 | 3.12e-01 | 100.0% | 60.4% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 41.0 | 2.99e-01 | 90.2% | 91.8% |
| 2hv2A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 3.80e-01 | 84.1% | 88.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3236717 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 55.0 | 5.02e-01 | 92.7% | 66.4% |
| 4013325 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.66 | 45.0 | 3.88e-01 | 100.0% | 45.6% |
| 3691620 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.65 | 42.0 | 3.72e-01 | 100.0% | 47.0% |
| 3939374 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 54.0 | 3.62e-01 | 92.7% | 23.7% |
| 4990821 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.61 | 50.0 | 3.44e-01 | 87.8% | 67.3% |
| 5007619 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.61 | 43.0 | 3.96e-01 | 84.1% | 56.4% |
| 3170924 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.60 | 50.0 | 3.82e-01 | 93.9% | 65.6% |
| 4027856 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.59 | 36.0 | 3.66e-01 | 72.0% | 60.0% |
| 5019603 | 3010.1.1.0 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains | 0.58 | 46.0 | 4.41e-01 | 95.1% | 75.8% |
| 5056319 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.58 | 39.0 | 3.02e-01 | 74.4% | 30.3% |
| 4979109 | 2006.1.4.56 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF5615 | 0.57 | 44.0 | 3.92e-01 | 82.9% | 96.6% |
| 5036805 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.57 | 44.0 | 4.22e-01 | 93.9% | 72.6% |
| 4013811 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.57 | 35.0 | 3.40e-01 | 100.0% | 55.6% |
| 4997962 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.56 | 47.0 | 3.45e-01 | 98.8% | 96.9% |
| 4938548 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.55 | 43.0 | 3.87e-01 | 95.1% | 60.0% |
| 4941441 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.54 | 37.0 | 3.28e-01 | 100.0% | 48.3% |
| 3188394 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.54 | 38.0 | 3.35e-01 | 73.2% | 78.3% |
| 3687369 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.54 | 37.0 | 3.51e-01 | 72.0% | 87.0% |
| 5077635 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 48.0 | 3.95e-01 | 100.0% | 91.3% |
| 5072530 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.53 | 36.0 | 3.13e-01 | 100.0% | 44.6% |
| 3602563 | 2007.1.5.14 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › PF27247 | 0.53 | 43.0 | 3.83e-01 | 91.5% | 94.4% |
| 3592296 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 39.0 | 3.44e-01 | 100.0% | 54.2% |
| 4955607 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.52 | 40.0 | 2.94e-01 | 81.7% | 40.5% |
| 4101594 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.52 | 43.0 | 3.90e-01 | 95.1% | 77.5% |
| 4112665 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.52 | 43.0 | 3.94e-01 | 92.7% | 74.5% |
| 4119784 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.51 | 41.0 | 3.71e-01 | 93.9% | 80.6% |
| 4629438 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.51 | 41.0 | 3.82e-01 | 93.9% | 88.2% |
| 3927041 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.51 | 44.0 | 3.79e-01 | 95.1% | 90.8% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.51 | 42.0 | 3.20e-01 | 97.6% | 74.2% |
| 4856794 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.50 | 30.0 | 3.15e-01 | 93.9% | 62.3% |
| 5025539 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.50 | 41.0 | 3.20e-01 | 92.7% | 86.0% |