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MF477236.1__ASU00844.1__NTR1_92__00092

Bact-Vir

MF477236.1__ASU00844.1__NTR1_92__00092

Identity

Accession:
MF477236 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nocardia_phage_NTR1

TaxID: 2026083

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-113
PDB
Domain cluster: rep: MH536815.1__AXH49454.1__SEA_CROSBY_66__00066__D14-113
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.69 36.0 4.58e-01 73.1% 92.9%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.64 56.0 4.14e-01 97.1% 55.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 38.0 4.15e-01 75.0% 73.8%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 41.0 3.32e-01 76.0% 37.3%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.62 39.0 3.26e-01 74.0% 35.5%
1ik3A04 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 4.00e-01 76.0% 85.8%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 39.0 3.38e-01 85.6% 44.4%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.59 46.0 2.89e-01 82.7% 45.3%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.59 41.0 3.81e-01 73.1% 79.4%
3uh0A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 41.0 2.92e-01 72.1% 36.8%
6vu9A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 40.0 2.96e-01 73.1% 43.8%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.96e-01 95.2% 93.7%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 41.0 2.98e-01 77.9% 69.6%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 38.0 2.82e-01 70.2% 29.0%
3zh5A00 2.40.128.710 Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E 0.55 50.0 4.62e-01 100.0% 82.6%
4g84A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 39.0 2.73e-01 73.1% 57.1%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 39.0 2.83e-01 75.0% 51.0%
1nyrA03 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 37.0 2.67e-01 71.2% 35.4%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.54 39.0 3.47e-01 75.0% 91.3%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.54 36.0 3.67e-01 81.7% 70.7%
2v1lA00 3.10.450.430 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 0.54 45.0 4.23e-01 91.3% 76.7%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.54 41.0 3.08e-01 81.7% 98.5%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.53 38.0 3.36e-01 75.0% 92.9%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 46.0 3.58e-01 96.2% 83.1%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 3.05e-01 86.5% 54.4%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.37e-01 77.9% 49.4%
3d3lA02 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 4.00e-01 70.2% 100.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 46.0 3.99e-01 97.1% 77.1%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.33e-01 70.2% 85.0%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.52 41.0 3.57e-01 87.5% 54.9%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 43.0 3.60e-01 89.4% 55.7%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.51 35.0 3.35e-01 71.2% 92.0%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 38.0 3.55e-01 81.7% 85.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508903 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.73 43.0 4.32e-01 73.1% 58.1%
3999482 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.67 47.0 4.64e-01 72.1% 81.8%
4939324 5.1.4.559 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel 0.67 47.0 3.21e-01 72.1% 28.7%
3328359 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.65 46.0 3.72e-01 81.7% 39.0%
3931053 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.64 45.0 4.60e-01 72.1% 94.0%
3733642 213.1.1.72 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.64 44.0 3.55e-01 71.2% 61.5%
3348491 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.63 53.0 3.56e-01 91.3% 33.9%
5029824 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.61 54.0 5.06e-01 96.2% 87.2%
3939262 213.1.1.34 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_13 0.61 44.0 3.67e-01 75.0% 58.9%
3205629 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 42.0 3.13e-01 71.2% 61.2%
4579287 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.60 42.0 2.86e-01 71.2% 41.4%
4091867 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.60 41.0 2.78e-01 70.2% 28.9%
4994605 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.59 45.0 3.84e-01 79.8% 58.8%
4132227 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.59 42.0 2.90e-01 73.1% 35.2%
3673899 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.59 53.0 3.22e-01 100.0% 35.7%
4959666 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.59 49.0 4.36e-01 93.3% 85.8%
3606068 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.59 44.0 3.30e-01 77.9% 48.3%
3600765 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.59 42.0 2.76e-01 73.1% 54.3%
4048443 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.59 40.0 2.71e-01 70.2% 29.3%
3369887 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.58 52.0 3.40e-01 97.1% 91.3%
4390937 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.58 40.0 2.75e-01 71.2% 30.8%
5015489 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.58 40.0 2.55e-01 74.0% 14.9%
3648607 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.58 53.0 3.19e-01 100.0% 63.3%
5054831 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.58 42.0 3.11e-01 76.0% 73.1%
3506301 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.58 42.0 3.44e-01 75.0% 61.1%
3676311 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.57 40.0 2.60e-01 71.2% 24.5%
3445404 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.57 41.0 4.18e-01 89.4% 77.0%
3824898 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.57 39.0 3.27e-01 71.2% 61.7%
3970330 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 40.0 3.68e-01 86.5% 57.0%
4464583 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.56 50.0 4.11e-01 100.0% 78.4%
4586844 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.56 38.0 2.46e-01 74.0% 14.8%
4135670 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.56 40.0 2.71e-01 74.0% 20.5%
5027137 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.55 40.0 2.76e-01 76.0% 85.7%
3671132 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.55 40.0 2.71e-01 76.0% 87.9%
3702061 11.1.1.1075 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › B9-C2 0.55 38.0 3.56e-01 72.1% 91.5%
3605492 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.55 41.0 3.08e-01 77.9% 47.9%
3234917 2484.1.1.45 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.54 47.0 3.31e-01 97.1% 85.1%
80 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.53 39.0 3.41e-01 76.9% 93.8%
5082591 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.53 39.0 2.69e-01 76.0% 91.3%
5064213 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.53 38.0 2.71e-01 76.0% 94.3%
3932019 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 37.0 3.14e-01 72.1% 58.8%
4001291 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 38.0 3.03e-01 75.0% 54.6%
5049458 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.52 37.0 2.78e-01 73.1% 46.9%
3967227 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.52 42.0 3.51e-01 94.2% 50.6%
3385471 4998.1.1.0 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain 0.51 46.0 4.13e-01 100.0% 82.1%
3571085 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.49e-01 75.0% 68.8%
3903639 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.51 45.0 2.90e-01 100.0% 40.4%
3598645 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.51 44.0 2.89e-01 94.2% 25.4%
1237447 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.51 45.0 2.87e-01 100.0% 40.1%
4973362 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.51 37.0 2.63e-01 76.0% 93.2%
4944090 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 37.0 3.64e-01 86.5% 71.8%
D2 high residues 127-223
PDB
Domain cluster: rep: NC_024215.1__YP_009036889.1__GJ21_gp64__00064__D236-351
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25311.2 best WDGH 110.7 4.70e-32 96.9% 89.7%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 42.0 4.90e-01 73.2% 93.9%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 36.0 3.47e-01 73.2% 94.7%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 44.0 3.34e-01 100.0% 65.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046464 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 35.0 3.36e-01 81.4% 59.1%
3851797 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 35.0 3.00e-01 70.1% 83.0%
3837990 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.51 35.0 3.20e-01 71.1% 96.2%
4630148 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 37.0 3.44e-01 84.5% 60.0%
3517194 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.50 37.0 2.38e-01 78.4% 23.3%