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MF497422.1__ATB52656.1__PVS_20__00020

Bact-Vir

MF497422.1__ATB52656.1__PVS_20__00020

Identity

Accession:
MF497422 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VspS_VS-ABTNL-3

TaxID: 2026084

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-89
PDB
Domain cluster: rep: OQ427159.1__WDS50273.1__X__00001__D621-674
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.80 56.0 5.82e-01 90.7% 78.4%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.74 51.0 5.51e-01 87.0% 90.7%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.73 52.0 5.19e-01 90.7% 74.5%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.71 57.0 5.43e-01 90.7% 87.7%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.66 52.0 4.47e-01 88.9% 87.8%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 49.0 4.39e-01 85.2% 71.4%
1a3wB03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 52.0 4.42e-01 98.1% 82.5%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 4.27e-01 100.0% 84.3%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 49.0 4.42e-01 94.4% 90.5%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 47.0 3.93e-01 96.3% 86.5%
3m7aA01 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.57 39.0 2.94e-01 70.4% 86.8%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.56 41.0 3.43e-01 85.2% 78.7%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 36.0 3.89e-01 85.2% 94.9%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 37.0 2.81e-01 70.4% 84.5%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.54 37.0 2.60e-01 72.2% 22.3%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 42.0 3.51e-01 92.6% 90.7%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 4.06e-01 81.5% 83.9%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.70e-01 92.6% 38.6%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.70e-01 100.0% 75.6%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.56e-01 92.6% 31.8%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 35.0 3.26e-01 74.1% 89.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3498702 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.72 54.0 5.68e-01 90.7% 97.8%
176 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.71 57.0 5.49e-01 90.7% 90.5%
5002640 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.69 51.0 5.23e-01 90.7% 88.0%
4930861 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 52.0 4.97e-01 85.2% 76.9%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.83e-01 77.8% 76.7%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 53.0 4.87e-01 85.2% 70.0%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 52.0 4.91e-01 85.2% 76.9%
5071089 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 51.0 5.23e-01 87.0% 90.0%
1868024 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.66 45.0 4.89e-01 83.3% 95.1%
4966178 375.1.1.357 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF30764 0.66 53.0 4.22e-01 90.7% 58.6%
5028514 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.66 52.0 5.03e-01 90.7% 78.3%
3768845 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.66 47.0 3.91e-01 79.6% 94.3%
4991056 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.65 48.0 4.86e-01 87.0% 80.0%
5069323 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 49.0 5.10e-01 87.0% 88.0%
1622844 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.65 44.0 4.23e-01 83.3% 61.9%
4996195 304.39.1.6 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_2nd 0.64 49.0 4.77e-01 85.2% 80.0%
4955635 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.64 50.0 4.71e-01 88.9% 70.3%
3982481 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.64 52.0 4.93e-01 90.7% 83.1%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.63 47.0 4.72e-01 87.0% 80.0%
3683109 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 44.0 2.69e-01 77.8% 25.1%
3337373 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.63 55.0 3.83e-01 100.0% 33.0%
1171969 66.1.1.2 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.60 41.0 4.33e-01 83.3% 93.2%
136402 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.60 42.0 4.51e-01 87.0% 97.6%
5050686 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 47.0 4.11e-01 90.7% 71.8%
4950580 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.58 44.0 3.42e-01 87.0% 40.0%
1007 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.58 40.0 4.22e-01 85.2% 97.6%
3979749 5.1.3.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SdiA-regulated 0.57 46.0 2.99e-01 90.7% 32.9%
3650711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.32e-01 100.0% 84.0%
5011958 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.55 43.0 3.67e-01 94.4% 88.0%
5003597 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 34.0 2.98e-01 70.4% 95.6%