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MF497422.1__ATB52668.1__PVS_32__00032

Bact-Vir

MF497422.1__ATB52668.1__PVS_32__00032

Identity

Accession:
MF497422 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VspS_VS-ABTNL-3

TaxID: 2026084

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-154
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vxvA00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.77 30.0 4.22e-01 73.3% 72.3%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 38.0 4.82e-01 96.2% 81.0%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 43.0 5.27e-01 97.7% 92.7%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 34.0 4.23e-01 93.9% 87.7%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.60 40.0 4.40e-01 92.4% 83.2%
1uwvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 28.0 3.52e-01 98.5% 76.7%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 38.0 3.80e-01 80.9% 65.9%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 30.0 3.69e-01 80.2% 90.9%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 30.0 3.09e-01 90.1% 54.5%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 39.0 3.86e-01 90.8% 73.0%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 38.0 3.56e-01 81.7% 62.0%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 28.0 2.87e-01 90.8% 51.9%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.51 37.0 4.08e-01 92.4% 97.1%
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.50 28.0 2.58e-01 90.8% 39.7%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.50 35.0 3.67e-01 95.4% 79.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258070 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.59 36.0 4.35e-01 73.3% 94.1%
3599565 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 30.0 3.69e-01 88.5% 78.8%
3614913 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.58 30.0 3.60e-01 77.9% 75.3%
3879179 2.1.1.169 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB1 0.57 42.0 3.84e-01 99.2% 57.7%
3249225 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 36.0 3.42e-01 83.2% 53.1%
3536928 11.1.1.668 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_M 0.54 38.0 3.87e-01 71.8% 97.7%
3652419 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.54 33.0 3.45e-01 72.5% 65.0%
5035575 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 4.27e-01 93.9% 97.9%
3890886 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 30.0 3.75e-01 93.1% 90.0%
3629767 6165.1.1.0 ↗ beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain 0.54 41.0 3.25e-01 80.9% 97.8%
3422361 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 29.0 3.69e-01 91.6% 90.7%
3468215 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.53 41.0 3.00e-01 82.4% 97.4%
3829251 9.1.1.34 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.53 38.0 3.48e-01 74.0% 73.1%
3182154 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.53 38.0 3.28e-01 75.6% 86.4%
3645656 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 32.0 3.92e-01 93.1% 98.8%
3535427 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.64e-01 74.0% 28.4%
3940546 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.52 31.0 3.31e-01 78.6% 67.8%
3559952 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.51 38.0 3.17e-01 77.9% 85.0%
3271559 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 43.0 4.34e-01 93.1% 97.8%
3919841 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.50 35.0 3.78e-01 72.5% 95.7%
3417120 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.50 33.0 3.50e-01 91.6% 74.2%