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MF498775.1__ATI18373.1__X__00323

Bact-Vir

MF498775.1__ATI18373.1__X__00323

Identity

Accession:
MF498775 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-53
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z9nA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 60.0 4.65e-01 100.0% 91.3%
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.66 58.0 4.25e-01 100.0% 37.8%
2vhaA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 58.0 4.58e-01 100.0% 94.8%
2bcqA04 3.30.210.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain 0.65 46.0 4.15e-01 76.6% 53.7%
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 55.0 4.07e-01 100.0% 66.7%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 3.35e-01 100.0% 32.7%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.59 48.0 3.56e-01 97.9% 99.3%
4zzfA02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 3.68e-01 89.4% 71.9%
3fsyB01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 3.73e-01 100.0% 59.3%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 3.30e-01 89.4% 84.5%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 41.0 3.24e-01 83.0% 58.3%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.23e-01 80.9% 66.7%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 37.0 2.36e-01 70.2% 41.3%
4d7sA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 2.99e-01 100.0% 29.2%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.54 42.0 3.74e-01 100.0% 92.9%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.54 36.0 2.91e-01 100.0% 31.5%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.53 44.0 3.42e-01 89.4% 76.8%
2o5fB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 41.0 2.98e-01 95.7% 69.8%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.18e-01 100.0% 40.2%
2bmxB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.10e-01 100.0% 55.2%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 42.0 3.51e-01 100.0% 71.1%
4j3vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.19e-01 100.0% 41.0%
3fedA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.52 41.0 2.77e-01 95.7% 100.0%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 42.0 3.05e-01 97.9% 61.7%
3isyA00 2.60.40.2360 Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI 0.51 38.0 2.96e-01 83.0% 64.1%
2uwiA02 2.10.50.10 Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 0.51 36.0 3.76e-01 95.7% 86.4%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.51 40.0 2.90e-01 100.0% 47.4%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 2.71e-01 95.7% 94.6%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 39.0 2.93e-01 91.5% 56.3%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 39.0 3.06e-01 100.0% 38.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.68 48.0 4.62e-01 83.0% 65.5%
223884 3610.1.1.2 ↗ a+b complex topology › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › THDPS_M,THDPS_N 0.65 55.0 3.84e-01 100.0% 51.2%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.64 56.0 4.94e-01 100.0% 84.3%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.61 53.0 4.83e-01 100.0% 90.8%
3976564 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 41.0 2.89e-01 70.2% 79.3%
3958223 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 41.0 3.32e-01 100.0% 35.8%
3976575 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 40.0 2.95e-01 70.2% 88.1%
3972395 101.1.2.847 ↗ alpha arrays › HTH › HTH › winged helix domain › GDH_ACT1 0.58 43.0 3.00e-01 85.1% 55.7%
3281354 304.8.1.61 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT1 0.58 40.0 2.89e-01 76.6% 46.9%
4579401 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.57 44.0 3.31e-01 91.5% 55.0%
3286213 327.6.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.56 44.0 3.56e-01 97.9% 77.4%
3488745 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.56 46.0 3.68e-01 100.0% 75.5%
4947839 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 41.0 3.16e-01 83.0% 82.4%
3400015 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.56 41.0 3.13e-01 83.0% 76.2%
4191473 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.55 43.0 3.35e-01 91.5% 57.4%
3343216 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.54 43.0 3.43e-01 100.0% 84.2%
3324497 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.54 41.0 3.39e-01 100.0% 92.2%
4931782 231.1.2.2 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › Peptidase_S58 0.54 43.0 2.75e-01 100.0% 75.2%
4466175 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.54 45.0 3.12e-01 97.9% 56.5%
5051298 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.53 43.0 3.33e-01 93.6% 38.3%
3948638 223.8.1.4 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.53 40.0 2.87e-01 87.2% 37.5%
3289252 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 43.0 3.10e-01 97.9% 62.5%
4944953 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.16e-01 87.2% 73.3%
3206651 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.52 40.0 2.94e-01 89.4% 69.6%
3269373 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.00e-01 85.1% 38.9%
136404 11.1.1.163 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BsuPI 0.51 38.0 2.96e-01 83.0% 64.1%
4010374 223.1.1.156 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 0.51 37.0 2.96e-01 87.2% 50.0%
4236893 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.51 42.0 2.76e-01 97.9% 96.5%
4943874 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 2.61e-01 100.0% 19.0%
4140256 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.51 42.0 2.92e-01 97.9% 52.8%
4141791 304.30.1.1 ↗ a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A 0.51 38.0 3.49e-01 95.7% 98.7%
3388184 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 37.0 3.05e-01 83.0% 57.1%
3787873 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.50 40.0 2.74e-01 95.7% 96.7%