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MF547662.1__AUO78315.1__LIBA6276_00097__00097

Bact-Vir

MF547662.1__AUO78315.1__LIBA6276_00097__00097

Identity

Accession:
MF547662 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridioides_phage_LIBA6276

TaxID: 2069614

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-115
PDB
Domain cluster: rep: OQ448195.1__WJJ58288.1__110_00125__00122__D24-114
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 43.0 2.95e-01 100.0% 22.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.58 30.0 3.58e-01 77.2% 76.2%
4da5A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 42.0 4.55e-01 100.0% 92.8%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 44.0 4.45e-01 99.0% 82.4%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.55 48.0 4.13e-01 98.0% 66.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 32.0 3.92e-01 93.1% 93.7%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 38.0 3.71e-01 97.0% 67.9%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 47.0 4.42e-01 100.0% 96.8%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 4.47e-01 100.0% 91.7%
2egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 35.0 3.27e-01 71.3% 92.9%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 44.0 4.28e-01 100.0% 94.0%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 39.0 3.80e-01 100.0% 76.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622600 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 38.0 3.59e-01 100.0% 49.6%
3993956 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.63 42.0 4.28e-01 100.0% 70.0%
3610755 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 43.0 4.19e-01 95.0% 66.1%
4561192 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 42.0 4.59e-01 99.0% 93.8%
3739762 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.58 40.0 3.84e-01 95.0% 60.8%
3189506 2485.2.1.0 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.57 47.0 4.52e-01 99.0% 80.0%
4944962 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 35.0 3.53e-01 100.0% 61.0%
3355345 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 33.0 3.87e-01 80.2% 82.9%
3620679 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 44.0 3.61e-01 98.0% 45.9%
3510502 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 47.0 4.82e-01 98.0% 95.8%
3234974 206.1.1.44 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.55 49.0 3.29e-01 99.0% 34.5%
5075707 7579.1.1.13 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH 0.53 42.0 3.00e-01 85.1% 36.5%
3280539 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.53 47.0 4.39e-01 100.0% 92.3%
3217717 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 44.0 2.90e-01 100.0% 21.4%
3788335 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.53 47.0 3.15e-01 100.0% 27.3%
3215628 206.1.1.44 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.53 48.0 3.24e-01 100.0% 34.4%
3845007 5.1.5.183 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, DUF4800, NBCH_WD40 0.53 39.0 2.61e-01 100.0% 20.0%
5035135 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.81e-01 87.1% 43.0%
3775858 5.1.4.547 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF4800, NBCH_WD40 0.52 39.0 2.59e-01 100.0% 19.8%
3725005 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.52 46.0 4.22e-01 100.0% 85.9%
3277687 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 47.0 4.49e-01 99.0% 94.1%
3894757 4096.1.1.1 ↗ a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.52 42.0 3.11e-01 89.1% 48.0%
None — 0.51 45.0 3.17e-01 100.0% 30.3%
3961595 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.51 36.0 3.37e-01 74.3% 97.7%
3390588 4096.1.1.1 ↗ a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.50 41.0 3.17e-01 89.1% 56.6%
3952888 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.50 40.0 3.39e-01 92.1% 51.2%
4079234 220.1.1.54 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_18 0.50 38.0 3.45e-01 81.2% 70.7%