←Back to structures

MF547662.1__AUO78345.1__LIBA6276_00127__00127

Bact-Vir

MF547662.1__AUO78345.1__LIBA6276_00127__00127

Identity

Accession:
MF547662 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridioides_phage_LIBA6276

TaxID: 2069614

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-49_110-121
PDB
Domain cluster: rep: NC_024792.1__YP_009056360.1__LD13_gp091__00091__D7-60_121-132
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.69 59.0 4.50e-01 100.0% 50.4%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.67 58.0 4.74e-01 100.0% 63.0%
2jjuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 57.0 4.70e-01 100.0% 66.7%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 54.0 4.33e-01 100.0% 55.1%
3lohE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 4.23e-01 100.0% 74.8%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 37.0 2.91e-01 100.0% 26.0%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 53.0 4.06e-01 100.0% 65.9%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.38e-01 100.0% 69.0%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.28e-01 100.0% 55.7%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.40e-01 100.0% 65.6%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 49.0 4.63e-01 100.0% 74.6%
5yxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.16e-01 100.0% 70.0%
2f51A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 44.0 3.63e-01 82.1% 73.0%
3da8B00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.59 44.0 3.08e-01 100.0% 22.9%
1cjyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 50.0 3.95e-01 100.0% 50.8%
3e9eB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.58 49.0 3.32e-01 100.0% 97.1%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 42.0 3.30e-01 78.6% 69.2%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.27e-01 100.0% 65.6%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 42.0 3.37e-01 82.1% 64.8%
1bquA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.05e-01 100.0% 58.0%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.16e-01 100.0% 63.6%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 42.0 3.37e-01 89.3% 87.7%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 47.0 3.53e-01 100.0% 48.7%
3w57A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 47.0 3.87e-01 100.0% 55.0%
1nbuA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.56 46.0 3.79e-01 100.0% 76.3%
3fjyA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 48.0 3.43e-01 100.0% 98.8%
1dr9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.89e-01 100.0% 70.5%
4d05A01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.55 45.0 4.21e-01 100.0% 76.3%
1vq8N00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 39.0 2.70e-01 100.0% 23.1%
3v67A01 3.30.450.210 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain 0.53 43.0 3.42e-01 92.9% 82.6%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 42.0 2.92e-01 100.0% 91.7%
3lp8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 45.0 3.46e-01 100.0% 69.6%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.52 44.0 3.40e-01 100.0% 89.6%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 45.0 4.19e-01 98.2% 98.6%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 45.0 4.13e-01 100.0% 89.2%
3iveA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 40.0 2.58e-01 89.3% 62.0%
1xxmC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 39.0 3.71e-01 92.9% 97.3%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 36.0 2.66e-01 78.6% 26.0%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.40e-01 100.0% 92.0%
1u6zA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 37.0 2.94e-01 80.4% 78.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966333 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 41.0 3.95e-01 100.0% 49.2%
3946465 5.1.4.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WG_beta_rep 0.67 40.0 2.40e-01 100.0% 8.0%
4277361 302.2.1.1 ↗ a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small 0.66 56.0 4.27e-01 100.0% 60.1%
4959362 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 57.0 4.71e-01 100.0% 59.0%
3977123 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.64 55.0 4.06e-01 100.0% 63.1%
4986643 2484.1.1.148 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_5 0.64 48.0 2.97e-01 82.1% 53.9%
4994815 11.14.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 0.64 55.0 4.62e-01 100.0% 61.0%
4935509 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 53.0 4.65e-01 100.0% 90.0%
3473974 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.63 41.0 3.01e-01 100.0% 25.5%
3622155 11.1.1.159 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Xylo_C 0.62 53.0 4.01e-01 100.0% 42.8%
3528622 11.1.1.597 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ELFN_Fn3 0.62 51.0 4.59e-01 100.0% 64.7%
5010182 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 53.0 4.05e-01 100.0% 69.3%
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.62 53.0 5.20e-01 100.0% 98.3%
3478309 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.62 52.0 4.35e-01 100.0% 65.7%
3913065 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.61 53.0 4.05e-01 100.0% 68.1%
3508957 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 51.0 3.92e-01 100.0% 49.7%
4870267 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.13e-01 100.0% 51.4%
3433727 1.1.1.10 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.59 50.0 3.54e-01 100.0% 39.5%
3408695 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.59 46.0 3.88e-01 100.0% 50.5%
3764241 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 50.0 3.94e-01 100.0% 59.2%
4492728 230.1.1.4 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.59 50.0 4.02e-01 100.0% 76.3%
1905698 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.59 46.0 3.68e-01 91.1% 83.1%
3499545 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 51.0 3.96e-01 100.0% 52.3%
3321727 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.58 48.0 4.54e-01 100.0% 75.7%
4285085 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.58 49.0 3.95e-01 100.0% 64.2%
4639080 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 47.0 3.64e-01 92.9% 70.0%
3702613 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 37.0 3.94e-01 100.0% 76.0%
5043858 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.70e-01 100.0% 56.4%
3368263 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 49.0 3.54e-01 100.0% 45.5%
5053864 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.56 45.0 3.20e-01 89.3% 56.1%
5034209 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.65e-01 100.0% 96.7%
3838338 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 46.0 4.16e-01 100.0% 87.1%
1106820 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.56 47.0 3.53e-01 100.0% 48.7%
4419139 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.56 45.0 3.43e-01 92.9% 36.6%
4167705 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.56 47.0 4.00e-01 100.0% 64.0%
4976326 229.1.1.9 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PRS2_N 0.55 37.0 3.27e-01 73.2% 94.7%
3295157 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 43.0 2.91e-01 100.0% 44.3%
4015561 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.71e-01 92.9% 15.3%
3943691 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.54 44.0 3.85e-01 100.0% 77.9%
3615055 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 45.0 3.49e-01 100.0% 52.5%
4960338 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.71e-01 100.0% 97.3%
4186191 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.53 46.0 3.00e-01 100.0% 22.3%
4955040 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 47.0 4.19e-01 100.0% 91.3%
3229807 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.53 45.0 4.06e-01 100.0% 70.0%
3216448 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 43.0 3.73e-01 100.0% 59.0%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 41.0 3.27e-01 91.1% 86.9%
3300719 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 42.0 3.45e-01 100.0% 45.0%
3594523 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.52 45.0 3.40e-01 100.0% 86.0%
3483499 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 45.0 4.14e-01 100.0% 93.3%
4863267 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.52 44.0 4.12e-01 98.2% 100.0%
119442 3102.1.1.1 ↗ beta sandwiches › hypothetical protein BT_3535 › hypothetical protein BT_3535 › hypothetical protein BT_3535 › BT_3535-like 0.52 38.0 2.67e-01 80.4% 25.8%
3407108 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.68e-01 100.0% 30.8%
None — 0.50 43.0 3.23e-01 100.0% 81.3%
4162427 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.50 36.0 2.74e-01 80.4% 100.0%
3953212 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.50 40.0 3.16e-01 92.9% 60.0%
3590389 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.50 43.0 2.75e-01 100.0% 92.3%
3611119 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.50 43.0 3.32e-01 100.0% 93.3%
3940407 372.2.1.1 ↗ a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU 0.50 41.0 2.66e-01 100.0% 98.4%
D2 high residues 56-105
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6zzx601 1.10.3460.10 Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain 0.63 49.0 3.26e-01 88.0% 24.0%
3v48A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 53.0 3.39e-01 100.0% 67.5%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 46.0 4.54e-01 100.0% 83.3%
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.51 33.0 2.75e-01 70.0% 34.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3750858 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 50.0 3.18e-01 100.0% 66.5%
3704038 574.1.1.1 ↗ alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp 0.51 43.0 3.92e-01 98.0% 75.7%