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MF547662.1__AUO78354.1__LIBA6276_00136__00136

Bact-Vir

MF547662.1__AUO78354.1__LIBA6276_00136__00136

Identity

Accession:
MF547662 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-86
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.77 64.0 6.06e-01 90.7% 80.8%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.74 61.0 5.92e-01 90.7% 80.9%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 45.0 4.22e-01 74.4% 51.5%
1xo0A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.73 60.0 5.58e-01 91.9% 77.5%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.70 54.0 5.48e-01 82.6% 83.7%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 36.0 4.27e-01 80.2% 72.4%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 45.0 5.28e-01 72.1% 100.0%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 43.0 3.95e-01 74.4% 50.5%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.67 50.0 5.21e-01 83.7% 84.0%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.67 47.0 4.05e-01 88.4% 47.0%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.66 40.0 4.35e-01 83.7% 72.6%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.65 43.0 4.45e-01 77.9% 71.6%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 46.0 4.79e-01 73.3% 82.7%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.64 45.0 4.32e-01 73.3% 71.0%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 42.0 4.15e-01 80.2% 63.0%
1rfyB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.64 43.0 4.29e-01 80.2% 67.0%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.63 44.0 4.66e-01 79.1% 83.8%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.63 41.0 4.09e-01 82.6% 64.4%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 39.0 4.21e-01 74.4% 74.3%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.37e-01 74.4% 79.8%
2kz5A00 1.10.880.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain 0.60 40.0 3.96e-01 80.2% 64.8%
3kkdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 52.0 4.01e-01 98.8% 71.7%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.59 40.0 4.29e-01 82.6% 79.2%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.58 46.0 3.96e-01 83.7% 80.5%
4u2vA02 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 46.0 4.79e-01 87.2% 92.5%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 35.0 3.69e-01 74.4% 65.8%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 40.0 4.12e-01 75.6% 74.7%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 39.0 4.12e-01 77.9% 81.3%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 47.0 3.66e-01 93.0% 48.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.56 38.0 3.73e-01 77.9% 62.9%
3na6A00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 43.0 2.93e-01 83.7% 59.1%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 39.0 4.33e-01 79.1% 88.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 42.0 4.36e-01 77.9% 87.3%
1cy5A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 38.0 3.78e-01 86.0% 67.4%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 44.0 4.04e-01 86.0% 87.5%
2yv9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 44.0 3.74e-01 84.9% 73.1%
3ibpA01 1.20.58.850 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 4.43e-01 80.2% 93.1%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 36.0 3.47e-01 82.6% 58.6%
3l09A01 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 3.99e-01 81.4% 94.9%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 47.0 4.35e-01 96.5% 86.6%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 38.0 4.06e-01 74.4% 85.3%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 47.0 4.16e-01 95.3% 80.5%
4mduA02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.53 43.0 4.39e-01 87.2% 100.0%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.53 40.0 3.90e-01 82.6% 71.7%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 45.0 3.68e-01 100.0% 87.3%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 41.0 3.60e-01 84.9% 83.8%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 35.0 3.81e-01 74.4% 84.1%
2bkkC02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.52 42.0 3.48e-01 93.0% 90.2%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.72e-01 83.7% 84.3%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 42.0 4.02e-01 89.5% 94.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4040148 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 69.0 6.50e-01 88.4% 84.0%
3958903 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.80 68.0 6.34e-01 90.7% 87.6%
4473841 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 66.0 6.17e-01 91.9% 81.0%
4965168 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 65.0 5.90e-01 91.9% 84.3%
5030306 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.75 62.0 6.00e-01 91.9% 80.0%
3926773 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.74 62.0 6.06e-01 90.7% 82.1%
5022016 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.71 58.0 5.67e-01 91.9% 81.1%
4938697 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.71 58.0 5.73e-01 90.7% 84.4%
3823825 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.71 52.0 5.68e-01 80.2% 97.1%
4334667 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.70 61.0 5.82e-01 95.3% 82.0%
3392823 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.70 46.0 3.97e-01 88.4% 44.6%
4972578 109.23.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 0.69 55.0 5.27e-01 87.2% 78.8%
4047175 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 4.59e-01 81.4% 78.3%
4015114 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.65 50.0 4.82e-01 82.6% 75.0%
3201942 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 49.0 4.89e-01 81.4% 95.6%
3906058 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.63 50.0 3.64e-01 88.4% 30.8%
3749655 101.1.17.16 alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th 0.63 50.0 4.41e-01 87.2% 58.5%
4949876 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 39.0 4.50e-01 76.7% 86.2%
5078061 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.61 55.0 4.24e-01 100.0% 62.1%
3331225 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.60 40.0 4.40e-01 70.9% 84.3%
3499219 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.59 50.0 3.83e-01 96.5% 66.7%
3579249 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 42.0 4.24e-01 74.4% 75.3%
3283630 601.7.1.18 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_SAV_6107 0.58 42.0 3.86e-01 77.9% 59.1%
3308724 3721.1.1.2 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › MAP65_ASE1 0.57 43.0 4.31e-01 89.5% 74.4%
4999712 601.7.1.20 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Abi_C 0.57 41.0 3.45e-01 74.4% 73.6%
3989810 3291.1.1.5 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Relaxase_C 0.57 42.0 4.06e-01 76.7% 84.2%
3702176 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.56 46.0 3.94e-01 90.7% 82.9%
3770420 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 46.0 4.02e-01 90.7% 78.4%
3552834 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.54 40.0 3.68e-01 82.6% 57.5%
3759866 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.54 40.0 3.87e-01 83.7% 67.0%
4061410 3748.1.1.2 extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › CSN5_C 0.54 39.0 3.64e-01 75.6% 63.8%
4887248 601.7.3.0 alpha bundles › Four-helical up-and-down bundle › HEPN 0.54 49.0 3.54e-01 100.0% 57.9%
4954575 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 43.0 4.22e-01 86.0% 91.1%
5067099 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.52 46.0 3.89e-01 94.2% 80.0%
3737780 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 42.0 3.99e-01 86.0% 87.0%
5077698 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.51 40.0 2.93e-01 86.0% 36.0%
4481623 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.51 42.0 3.37e-01 94.2% 48.6%
3637620 4336.2.1.0 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 0.50 35.0 3.46e-01 72.1% 78.9%
D2 high residues 98-290
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22823.3 best MrpR_C_cat 81.0 1.10e-22 90.7% 75.5%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.82 61.0 6.39e-01 92.2% 82.1%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.72 60.0 6.38e-01 97.9% 97.7%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.61 53.0 4.73e-01 92.7% 67.3%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 31.0 4.15e-01 99.5% 91.2%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 27.0 3.95e-01 75.6% 100.0%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 26.0 3.75e-01 75.1% 100.0%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.54 20.0 3.29e-01 81.3% 89.0%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 30.0 3.86e-01 99.0% 97.3%
2cz2A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 23.0 2.79e-01 87.6% 60.3%
3en9A04 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 26.0 3.31e-01 87.6% 79.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3919967 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 23.0 4.13e-01 85.5% 90.0%
3196401 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 21.0 3.81e-01 90.2% 89.1%
3696323 101.1.8.10 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.69 60.0 5.00e-01 92.2% 79.4%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.65 59.0 5.94e-01 95.3% 95.8%
4103293 101.1.2.62 alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD 0.62 27.0 4.02e-01 88.6% 95.0%
5029930 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 25.0 3.51e-01 99.5% 76.0%
3947132 101.1.1.109 alpha arrays › HTH › HTH › Three-helical HTH › DUF2543 0.57 24.0 3.73e-01 100.0% 100.0%
3238610 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 31.0 3.55e-01 99.5% 74.5%
3737512 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 31.0 3.52e-01 100.0% 74.7%
4864645 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 30.0 3.44e-01 99.5% 74.0%
2841 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 31.0 3.65e-01 99.5% 84.8%
3829747 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 31.0 3.45e-01 100.0% 74.7%
3595452 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.51 32.0 3.55e-01 99.5% 76.8%
3773789 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 31.0 3.47e-01 100.0% 75.3%
3932619 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 30.0 3.52e-01 99.5% 80.4%
5078898 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.50 28.0 3.65e-01 92.2% 96.4%
3940618 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 30.0 3.36e-01 97.9% 75.3%